Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02437 ATGGGAACGCGACCGCAGCAATCGTGTGTAGATGAAGAGGATGAGGAATTGATGGGTTGTGGAACTACGATTTCGGGTCAATCAGGCTCGACGAGTAGGAGTGCCGGGTTACCGTCTAGTCGGAGTGAGCAGACGACGGGAACAGCTGCCGGTAATAATGCTGCTCTCAAATTGAATCATCTTGATATACAGGATGATGATGCTGCTTCACAGGGAGTGGTTGCTAGCAAGAGGAAGAAGAGAGGCCAACGGGCTGTTGGGGGTGATAAGAATGGAAGAGGGCTCCGGCAATTTAGTATGAAAGTGTGTGAGAAGGTAGAAAGTAAAGGAAGAACAACTTACAATGAGGTGGCAGATGAACTTGTGGCTGAATTTTCTGATCCAAGCAATGGTGTTATGTCCCCTGATCAGCAACAATACGATGAGAAAAACATCCGGCGAAGGGTCTATGATGCTCTTAATGTTCTCATGGCTATGGATATTATTTCCAAGGATAAAAAGGAAATACAATGGAAGGGTCTTCCTCGTACCAGTCAGAATGATATTGAAGAACTAAAGAAAGAGCGTCTTGGGCTCAGGAATAGAATTGAAAGGAAAGCAGCGTATCTGCAGGAGCTCGAGGAGCAATTTGTAGGTCTTGAGAACCTTATTCAACGAAATGAACAATTATATAGCTCAGGAAATCCTCCCAGTGGAGGTGTATCTTTACCTTTTATTTTGGTACAGACCCGTCCTCATGCAACTGTTGAAGTGGAAATATCAGAAGACATGCAGCTTGTTCATTTTGATTTCAATAGTTCTCCTTTTGAGCTGCATGACGACAATTATGTTCTGAAGGCAATGAATTTTGGTGAGAGCGAGAGACCACAGAGTGACAATGTTACACACAATATTACGGATGGAAGGGAAGGTTCTAGCATGTCAGGCATGTATCAGTCACAGGTTCATCCTTCAGTTTCAAACATGTCAGTTAGGCCTCCCACATCACCTCCACTGCCTGGAATATTAAAGGCAAGAGTTAAGCAAGAGCATTGA 1035 0.4415 MGTRPQQSCVDEEDEELMGCGTTISGQSGSTSRSAGLPSSRSEQTTGTAAGNNAALKLNHLDIQDDDAASQGVVASKRKKRGQRAVGGDKNGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFSDPSNGVMSPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSQNDIEELKKERLGLRNRIERKAAYLQELEEQFVGLENLIQRNEQLYSSGNPPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSSPFELHDDNYVLKAMNFGESERPQSDNVTHNITDGREGSSMSGMYQSQVHPSVSNMSVRPPTSPPLPGILKARVKQEH 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02437 344 Gene3D - 85 178 IPR036388 -
Trre8g02437 344 SMART E2F_TDP_2 90 173 IPR003316 GO:0005667|GO:0006355
Trre8g02437 344 SUPERFAMILY E2F-DP heterodimerization region 180 293 IPR037241 -
Trre8g02437 344 Coils Coil 189 223 - -
Trre8g02437 344 Pfam E2F/DP family winged-helix DNA-binding domain 93 173 IPR003316 GO:0005667|GO:0006355
Trre8g02437 344 MobiDBLite consensus disorder prediction 287 344 - -
Trre8g02437 344 FunFam Transcription factor-like protein DPB 179 305 - -
Trre8g02437 344 Pfam Transcription factor DP 181 289 IPR014889 -
Trre8g02437 344 Gene3D Transcription factor DP 179 316 IPR038168 -
Trre8g02437 344 PIRSF Txn_factor_DP 4 344 IPR015648 GO:0005667|GO:0051726
Trre8g02437 344 MobiDBLite consensus disorder prediction 1 48 - -
Trre8g02437 344 MobiDBLite consensus disorder prediction 69 93 - -
Trre8g02437 344 CDD DP_DD 178 281 IPR014889 -
Trre8g02437 344 SMART DP_2 180 342 IPR014889 -
Trre8g02437 344 FunFam Transcription factor-like protein DPB 85 178 - -
Trre8g02437 344 SUPERFAMILY "Winged helix" DNA-binding domain 93 174 IPR036390 -
Trre8g02437 344 PANTHER TRANSCRIPTION FACTOR DP 23 322 IPR015648 GO:0005667|GO:0051726
Trre8g02437 344 MobiDBLite consensus disorder prediction 21 48 - -
Trre8g02437 344 MobiDBLite consensus disorder prediction 287 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02437 Trre-Chr8 19750196 19753889 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02437 80 281 E2F-DP Transcription Factor Family AT5G02470 54.412 2.15e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Trre8g02437 DP 2.5e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02437 K04683 - qsu:112000390 533.487