Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02436 ATGGGAACACGACCGCAACAATCGTGTGTAGACGAAGAAGATGAGGATTTTCTAGGTTGTGGAACCACCATTTCTGGACAATCAGGGTCAACAAGCAGGAGTGCTGGATTGCCGTCTAGCCGGAGTGAGCAGACGATTGCTACATCCGCTGGTGATAGTGCTGCTCTCAAAATGAACCATCTTGATATACAGGATGATGAAGCTGGATCACAGGGAGTAGTTGCTAGCAAGAAGAAAAAGAGAGGCCAACAAAGGGCTGTGGGAGGCGATAAAAATGGAAGAGGACTTCGTCAATTTAGCATGAAAGTTTGTGAGAAGGTAGAAAGTAAGGGAAGAACAACTTACAATGAGGTGGCAGATGAACTTGTGGCTGAATTTGCTGATCCCATCAATAGTGTTTTGTCCCCTGATAAGCAACAATATGATGAAAAAAACATTCGTCGAAGGGTCTATGATGCTCTGAATGTTCTCATGGCAATGGATATTATTTCTAAGGATAAAAAGGAAATACAATGGAAGGGTCTTCCTCGTACTAGTCTAAATGATATTGAAGAGCTAAAGACAGATCGTCTTGGGCTCAGGAATAGAATTGAAAGGAAATCATCCTATCTGCAGGAGCTTGAGGAACAATTTGTAGGTCTTCAGAACCTTATTCAACGAAATGAACAGTTATATAGCTCTGGAAATCCTCCCACCGGAGGTGTATCCTTACCTTTTATTTTGGTACAGACACGTCCTCATGCAACTGTTGAAGTGGAAATATCAGAAGACATGCAGCTTGTTCATTTTGATTTTAATAGTACTCCGTTTGAGTTGCATGACGACAATTATGTGCTCAAGGCAATGGAATTTGGTGATAGACCACAGAGTGATACTGTTACACTCAATGTTACAGATGGAGGGGAAGGTTCTAGTATGTCAGGCATGCATCAGTCACAGGTTCCTCCATCCTCTTCAAGTGTGTCAATTAGGCCCCCAACATCACCCCCACTCCCTGGAATATTAAAGGCAAGAGTCAAGCAGGAGCATTGA 1032 0.4283 MGTRPQQSCVDEEDEDFLGCGTTISGQSGSTSRSAGLPSSRSEQTIATSAGDSAALKMNHLDIQDDEAGSQGVVASKKKKRGQQRAVGGDKNGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPINSVLSPDKQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKTDRLGLRNRIERKSSYLQELEEQFVGLQNLIQRNEQLYSSGNPPTGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMEFGDRPQSDTVTLNVTDGGEGSSMSGMHQSQVPPSSSSVSIRPPTSPPLPGILKARVKQEH 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02436 343 CDD DP_DD 179 282 IPR014889 -
Trre8g02436 343 SUPERFAMILY E2F-DP heterodimerization region 180 294 IPR037241 -
Trre8g02436 343 SUPERFAMILY "Winged helix" DNA-binding domain 94 175 IPR036390 -
Trre8g02436 343 Gene3D Transcription factor DP 180 302 IPR038168 -
Trre8g02436 343 PIRSF Txn_factor_DP 4 343 IPR015648 GO:0005667|GO:0051726
Trre8g02436 343 PANTHER TRANSCRIPTION FACTOR DP 23 320 IPR015648 GO:0005667|GO:0051726
Trre8g02436 343 FunFam Transcription factor-like protein DPB 180 304 - -
Trre8g02436 343 Pfam Transcription factor DP 182 293 IPR014889 -
Trre8g02436 343 Gene3D - 86 179 IPR036388 -
Trre8g02436 343 MobiDBLite consensus disorder prediction 1 51 - -
Trre8g02436 343 Coils Coil 190 224 - -
Trre8g02436 343 SMART E2F_TDP_2 91 174 IPR003316 GO:0005667|GO:0006355
Trre8g02436 343 SMART DP_2 181 341 IPR014889 -
Trre8g02436 343 FunFam Transcription factor-like protein DPB 86 179 - -
Trre8g02436 343 MobiDBLite consensus disorder prediction 21 51 - -
Trre8g02436 343 Coils Coil 340 343 - -
Trre8g02436 343 MobiDBLite consensus disorder prediction 289 343 - -
Trre8g02436 343 MobiDBLite consensus disorder prediction 66 94 - -
Trre8g02436 343 MobiDBLite consensus disorder prediction 289 321 - -
Trre8g02436 343 Pfam E2F/DP family winged-helix DNA-binding domain 94 174 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02436 Trre-Chr8 19743544 19746717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02436 65 283 E2F-DP Transcription Factor Family AT5G02470 52.273 1.61e-78 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Trre8g02436 DP 8e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02436 K04683 - qsu:112000390 529.635