Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02433 ATGGCTACAAATTTCAACTTCAACATGACCCAAAACATAATCACAACTCATCCTCATTGGTATTCATCAAAAACTGGAATTTACAGTAGTGTTCATTCTCCTTTGAATCTTCCAACTGACCCTTTTGTTGACATTGTTTCTTTCATTTTTTCTCATCCTCATGATGGGGTTTTAGCCCTTATTGATTCCTCATCTGGGTTTTCCATTTCTTACTCAAAGTTGTTACCTTTAGTCAAATCTATGGCTTCTGGTTTACATAAAATGGGTGTTTCAAAAGGTGATGTTGTTTTGCTTTTACTTCCAAATTCAATTTACTATCCTGTTATATTATTGGCTGTTTTGTATTTAGGTGCTGTTGTTACACCATTGAATCCTCTTAGTACTGTTGGCGAAATTCGTAAGCAGGTTAATGAGTGTGGTGTGAGTTTTGCTTTTACTGTGTCTGAAAATGTCAAGAAACTAGAGCTGTTATTAGGAATCAAACCCATTATTGCTGTTCCTGAAAATGACAAGGATTTGAGGAATGAGTGTTTTTCATGTTTTTTTAACCTTATTTATGGTAAATTTGATGTGCCTCCAAGGGTGGTTATTAGACAGGAAGATACTGCTGGTATATTGTATTCTTCTGGGACCACAGGTGTGAGTAAAGGAGTTGTTTTAACTCATAGAAATCTTATTGCTATGGTTGAGCTATTTGTGAGATTTGAAGCTTCTCAATATGAATACTCTTGTACCACAAATGTGTTTCTAGCTGTTTTGCCAATGTTTCATATATACGGTTTATCGCTTTTTGCTGCTGGATTACTGTCATTGGGTTCTACAATCGTTGTAATGAGGAAATTTGACATTGATGAGGTTGTTAGGGTGATTGACAAATATAATGTTACACACTTTCCTGTTGTTCCACCGATGGTGTCAGCATTGACAGCGAAGGCAAAAGGTGTTAATGGAAGTAAGTTGCGAAGTTTGAGACAAGTCTCCTGCGGTGCAGCGCCTTTGAGCACAGGAGTTATTAATGGTTTTGTTCATGCTTTCCCTAATGTTGATTTTATACAGGGTTATGGAATGACTGAGTCGACTGCAGTAGGAACACGTGGCTTCAATACTGAAAAGTTTCACAAATATTCTTCAATAGGGTTGTTAGCTCCGAACATGGAGGCAAAAGTGGTAGATTGGAATGGTGCATTTTTGCCCCCAGACAGCAGCGGCGAGCTTTGGTTAAGAGGGCCTTCAATTATGAGAGGGTACTTGAGTAATGAGGAAGCTACAATGTCAACAATTGATAAAGATGGTTGGCTACATACCGGAGATATTGTTCATTTTGATCAGGATGGATATTTACACGTGTCTGACCGATTGAAAGACATTATCAAATACAAGGGCTTTCAGATTGCTCCTGCTGATTTAGAAGCGGTGTTAATTTTGCATCCTGAAATAGTTGATGCTGCTGTTACAGCTGCCAAAGATGAAGAAATTGGGGAGATTCCAGTGGCGTTTGTGGTAAAGAAGGTTGGAAGTGTACTTTCTCCGAAGCATGTTATTGATTATGTTGCCGAGCAGGTTGCTCCATACAAGAAAGTTCGGAAAGTGTTCTTCACCGACAAGATACCAAGGTCTCCAACTGGGAAGATCCTCCGAAAGGAACTCAGGCATCGCTTGACTTCTAAACTCTAA 1674 0.3883 MATNFNFNMTQNIITTHPHWYSSKTGIYSSVHSPLNLPTDPFVDIVSFIFSHPHDGVLALIDSSSGFSISYSKLLPLVKSMASGLHKMGVSKGDVVLLLLPNSIYYPVILLAVLYLGAVVTPLNPLSTVGEIRKQVNECGVSFAFTVSENVKKLELLLGIKPIIAVPENDKDLRNECFSCFFNLIYGKFDVPPRVVIRQEDTAGILYSSGTTGVSKGVVLTHRNLIAMVELFVRFEASQYEYSCTTNVFLAVLPMFHIYGLSLFAAGLLSLGSTIVVMRKFDIDEVVRVIDKYNVTHFPVVPPMVSALTAKAKGVNGSKLRSLRQVSCGAAPLSTGVINGFVHAFPNVDFIQGYGMTESTAVGTRGFNTEKFHKYSSIGLLAPNMEAKVVDWNGAFLPPDSSGELWLRGPSIMRGYLSNEEATMSTIDKDGWLHTGDIVHFDQDGYLHVSDRLKDIIKYKGFQIAPADLEAVLILHPEIVDAAVTAAKDEEIGEIPVAFVVKKVGSVLSPKHVIDYVAEQVAPYKKVRKVFFTDKIPRSPTGKILRKELRHRLTSKL 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02433 557 ProSitePatterns Putative AMP-binding domain signature. 205 216 IPR020845 -
Trre8g02433 557 FunFam 4-coumarate--CoA ligase 2 455 556 - -
Trre8g02433 557 FunFam Long-chain-fatty-acid--CoA ligase FadD 33 454 - -
Trre8g02433 557 Pfam AMP-binding enzyme C-terminal domain 469 543 IPR025110 -
Trre8g02433 557 Pfam AMP-binding enzyme 58 459 IPR000873 -
Trre8g02433 557 SUPERFAMILY Acetyl-CoA synthetase-like 54 553 - -
Trre8g02433 557 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 21 551 - -
Trre8g02433 557 CDD 4CL 37 549 - -
Trre8g02433 557 Gene3D - 30 454 IPR042099 -
Trre8g02433 557 Gene3D - 455 556 IPR045851 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02433 Trre-Chr8 19722157 19724833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02433 10 557 Monolignol Biosynthesis Gene Families AT4G19010 61.162 0.0 676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02433 K01904 - gmx:100804808 869.381