Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02429 ATGTCAAACATGCATTATATTTTCAGCATGTTATCATTTCTTCTTCTTGTAGAAAATCTCAGCACAATACATTGTCATACAAAGGGAATTCGACAAAAACATTCTTCAGGAAACAGTTTATCAACTAACAATACAACAAGAACAGAGTTAGCAGAACAACAATTCATGAAATGGGTGAGTTTTGTTGGTGGTCTTAAACACTCAGTTTTCAAGACTGCAAAAAATAAGCTCTTTGCTTCTTATACTTTGCACGTTGATAAGAATCCTTCTTTGGGAGATTTTGCAACAATTCAAGAAGCCATTGATTCTCTTCCTTCTATAAATCTTGTTAGAGTTGTCATCAAGGTTCATGCAGGTGTTTACGCGGAGAAAGTTAACATTCCTCCATTAAAATCCTTCATAACCATAGAAGGAGATGGAGCTGATACAACAATTGTTCAATGGGGTGACACTGCTCAAACACCAGGTCCAAGAGGGAATCCAATGGGAACATATGGTTCAGCAACTTTTGCAGTTAATTCACCTTATTTCATTGCTAAAAACATCACATTCCAAAACACTTTTCCTGTTCCTGCACCTGGAGCAATTGGAAAACAAGCAGTGGCATTTAGAATTTCAGCAGACACAGCATCATTCTTAGGTTGCAAATTTTTAGGAGCACAAGATACACTTTATGATCATATTGGTAGACATTACTATAAAGATTGTTACATTGAAGGTTCTGTTGATTTCATTTTTGGCAATGCTCTCTCCTTATTTGAGGGATGTCACGTGCATGCAATAGCTAGAAATACAGGTGCATTAACAGCACAAGGAAGGAGCAGTATGTTACAAGACACAGGTTTCTCATTTGTGAACTGTAAAGTGACAGGTTCAGGGGCACTATACCTTGGAAGAGCTTGGGGTCCTTTTTCACGAGTTATCTTTGCTTATACATATATGGACAATATCATCATTCCTAAAGGATGGTATAATTGGGGTGATCCTAACCGTGAAATGACTGTGTTCTATGGACAATACAAATGCACAGGACCTGGAGCAAACTTTGCAGGGAGAGTATCATGGTCAAGAGAACTCACTGATGAGGAAGCTAAACCTTTTCTTTCACTTACTTTTATTGATGGGACTGAATGGATAAATTTTTAG 1146 0.3743 MSNMHYIFSMLSFLLLVENLSTIHCHTKGIRQKHSSGNSLSTNNTTRTELAEQQFMKWVSFVGGLKHSVFKTAKNKLFASYTLHVDKNPSLGDFATIQEAIDSLPSINLVRVVIKVHAGVYAEKVNIPPLKSFITIEGDGADTTIVQWGDTAQTPGPRGNPMGTYGSATFAVNSPYFIAKNITFQNTFPVPAPGAIGKQAVAFRISADTASFLGCKFLGAQDTLYDHIGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAIARNTGALTAQGRSSMLQDTGFSFVNCKVTGSGALYLGRAWGPFSRVIFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGPGANFAGRVSWSRELTDEEAKPFLSLTFIDGTEWINF 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02429 381 FunFam Pectinesterase 79 381 - -
Trre8g02429 381 SUPERFAMILY Pectin lyase-like 79 380 IPR011050 -
Trre8g02429 381 ProSitePatterns Pectinesterase signature 2. 238 247 IPR033131 -
Trre8g02429 381 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 76 380 - -
Trre8g02429 381 Gene3D - 78 381 IPR012334 -
Trre8g02429 381 Pfam Pectinesterase 92 375 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02429 Trre-Chr8 19688909 19693280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02429 2 379 Carbohydrate Esterase AT5G47500 41.953 6.86e-101 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02429 K01051 - gmx:100793314 663.685