Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02422 ATGACAGCTGGGAGCGTGAATCACGTATTACCGCCATTCTTGAGCAAAACCTACGATATGGTTGACGACTCTTCAACCAACTCGATCCTTTCATGGGGTAAAAACGACAACACTTTCGTCGTTTTCAATGCTACCGATTTCTCCAAACACATCTTGCCCAAATATTTCAAGCACAACAACTTCTCCAGCTTCGTCAGGCAATTGAATACCTACGGTTTTAGAAAGGTTGACCCTGATCACTGGGAATTTGCACATGAAGGATTCTTAAGGGGTCAAAAACAATTGTTGAAGACTATCACTAGGAGGAAATCTACTAATGCAAATGGTAATAGTCAGCAACCATCTAAGGTGCAGAACCCAACTGCTGGGTCATGTGTTGAAGTGGGGAAGTTTGGGATTGACGAAGAGGTTGAACGACTGAAACGGGATAAGAATGTTCTTATGCAGGAACTTGTTAGGTTAAGACAGCAACAACAAACGACCGATAACCAATTGCAAAATGTTGGGCAACGTGTGCAAGTGATGGAGCAGCGTCAGCAACAGATGATGTCGTTCCTGGCAAAGGCCATGAATAGTCCGGGCTTCATGGCTCAGTTTTCGCAGCAGCAGAATGAAAGTAATAGACATGTTACTGCAGTTAAAAAGAGGCGGCTCCAGAGACAGGAAGAAGATAATTTAGCCACCAAGAATCCCCATAATCCTCTTGATGGACGTGTTGTCAAGTACCAGCCTTCGATTAATGACGCTGCGAAAACATTATTTAGCCAGATAATGCAAATGAATAACTCTACAAGGATGGACTCGTCCATTAAGAACCATGATGCATTCCTTATTGATGATATTCCTTCGGCCATTCCATTAGATAGCAGTAGTTCCTCCACCCAAGTTTCTGGTGTAACGCTTTCTGAGGTTCCACCTATTTCTGGGAAGTCGTGCATGGTAGTAGAATCTCAATTTCCTGTTAGTTGTATGACCAGTAGCATGTCTGAGGTACAATCCTCACCTACAGTGTTGACTGACTGTGCCAAAGCAGCTGAGTTTCCTGAATTAACAGCACATAACTGTCAAGACAATGTTTTGGATTTTGGTAAAGTTGAAGGGATGGCTACAGAAAGCAGCTTCATGAATCCTAATCAAAATTTTGTGGGGTCTGTCGGTGAGAATGACGAGGAGTTGGACGTCTTATCAGCTGTTTTGAATGGAACACAATCCTTGGAAACTGATGCTTTTTCTCCCAATGCAAATGAAGTTTCTAAGCTTCCAGGAATCAATGATGAATTATGGGAACTGTTTTTTAGGCCAAACCCACTTACTGGAGACACAGATGAAGATAAAGGTAGCTGCTCTCTAGGATATGGTTTAACTAAGGACCAGGAATTGTTATTAGATAAGGAGATTCAACAAGAAAAGATGGACAAGAAACAACATATGGACCATCTTACTCAACAGATGGAACTTCTTGCATCAGACTCATCGTTGTGTATATAA 1488 0.4207 MTAGSVNHVLPPFLSKTYDMVDDSSTNSILSWGKNDNTFVVFNATDFSKHILPKYFKHNNFSSFVRQLNTYGFRKVDPDHWEFAHEGFLRGQKQLLKTITRRKSTNANGNSQQPSKVQNPTAGSCVEVGKFGIDEEVERLKRDKNVLMQELVRLRQQQQTTDNQLQNVGQRVQVMEQRQQQMMSFLAKAMNSPGFMAQFSQQQNESNRHVTAVKKRRLQRQEEDNLATKNPHNPLDGRVVKYQPSINDAAKTLFSQIMQMNNSTRMDSSIKNHDAFLIDDIPSAIPLDSSSSSTQVSGVTLSEVPPISGKSCMVVESQFPVSCMTSSMSEVQSSPTVLTDCAKAAEFPELTAHNCQDNVLDFGKVEGMATESSFMNPNQNFVGSVGENDEELDVLSAVLNGTQSLETDAFSPNANEVSKLPGINDELWELFFRPNPLTGDTDEDKGSCSLGYGLTKDQELLLDKEIQQEKMDKKQHMDHLTQQMELLASDSSLCI 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02422 495 Coils Coil 137 157 - -
Trre8g02422 495 SUPERFAMILY "Winged helix" DNA-binding domain 10 102 IPR036390 -
Trre8g02422 495 PRINTS Heat shock factor (HSF) domain signature 13 36 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre8g02422 495 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre8g02422 495 PRINTS Heat shock factor (HSF) domain signature 51 63 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre8g02422 495 MobiDBLite consensus disorder prediction 218 238 - -
Trre8g02422 495 ProSitePatterns HSF-type DNA-binding domain signature. 52 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre8g02422 495 SMART hsfneu3 9 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre8g02422 495 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 10 291 IPR027725 -
Trre8g02422 495 FunFam Heat shock transcription factor 1 6 103 - -
Trre8g02422 495 Pfam HSF-type DNA-binding 13 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Trre8g02422 495 Gene3D - 5 103 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02422 Trre-Chr8 19620254 19622797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02422 6 491 HSF AT5G16820 49.899 1.60e-137 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Trre8g02422 HSF_DNA-bind 3.2e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02422 K09419 - gmx:100793665 519.62