Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02416 ATGATGGGGAGAGCACCATGTTGTGATGAAAGTGGTTTGAAGAAAGGACCTTGGACACCAGAAGAGGATAGAATATTGGTGGATCATATTGAGAAACAAGGCCATGGAAGTTGGAGAGCACTTCCAAAGTTAGCAGGATTGAATAGGTGTGGCAAAAGTTGCAGATTAAGGTGGACTAATTATTTAAGACCTGATATCAAAAGAGGAAAATTCACTGAGGAAGAAGAGAAAACCATCATCAATTTACATGCTGTTCTTGGGAATAAGTGGTCAGCCATAGCAGGTCATCTACCAGGGAGGACTGATAATGAAATAAAGAATTTTTGGAACACACATTTAAAGAAAAAGCTTCTTCAAATGGGATTAGATCCAGTAACTCATCGTCCAAGAATTGATCATCTCAATCTTATGACAAATCTTCAACAGTTTCTTGCTGCAAATGTTCTCCATAATTTTTCAAACACTTGGGACATTACTACTAATAATGCTCTAAAACTTCAATCAGATGCAGCCAAATTTCAATTACTTCAAAACATGCTTCAAATTCAAGTCCTTAATGCTAACAATACTCTTCCTATAAATCCATTTGCACAATCATCATCTTCATTACAGCAAGAAAATTTTCTAAATGAAGTTTTAGGATTGAATAATCATCAGTCCAATTTTCTTTCTCAAAATTATCATGGAAATTTTCAAGGCTTTGAAGAAGTGCCTCAGATGCAGAATGCTCTAAATCAGTGTATGAATAATGGTGGTAGCAGCAATAGTAGTAGTTGCTTGAATCAAAAGGTTGATGAAGTATTTGATGCTACAAATTCTTCTTTAAATTTGCTTCCGAATTTAGTTTCGGTTTCGCCGGAATGTTCTGCTGTGAAAGGAATGATGGAAAACAAGGTAAACCAAAATGAGTGTTCTAATCCTTCTTCAACTTCAACAACCTTTGAAATGTTGGGAGATTTCATGTATGAAGATGTAAGCATAGATGCTTGTTGGAAAGATCTCTTAGAGTAA 1011 0.3541 MMGRAPCCDESGLKKGPWTPEEDRILVDHIEKQGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFTEEEEKTIINLHAVLGNKWSAIAGHLPGRTDNEIKNFWNTHLKKKLLQMGLDPVTHRPRIDHLNLMTNLQQFLAANVLHNFSNTWDITTNNALKLQSDAAKFQLLQNMLQIQVLNANNTLPINPFAQSSSSLQQENFLNEVLGLNNHQSNFLSQNYHGNFQGFEEVPQMQNALNQCMNNGGSSNSSSCLNQKVDEVFDATNSSLNLLPNLVSVSPECSAVKGMMENKVNQNECSNPSSTSTTFEMLGDFMYEDVSIDACWKDLLE 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02416 336 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Trre8g02416 336 FunFam MYB-related transcription factor 14 67 - -
Trre8g02416 336 FunFam Transcription factor MYB39 70 131 - -
Trre8g02416 336 SMART sant 14 64 IPR001005 -
Trre8g02416 336 SMART sant 67 115 IPR001005 -
Trre8g02416 336 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 2 254 - -
Trre8g02416 336 Gene3D - 70 117 - -
Trre8g02416 336 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Trre8g02416 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Trre8g02416 336 Gene3D - 14 67 - -
Trre8g02416 336 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Trre8g02416 336 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Trre8g02416 336 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Trre8g02416 336 CDD SANT 70 113 IPR001005 -
Trre8g02416 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Trre8g02416 336 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02416 Trre-Chr8 19554577 19556276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02416 2 336 MYB Transcription Factor Family AT5G16770 51.009 1.02e-104 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre8g02416 Myb_DNA-binding 1.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02416 K09422 - gmx:547488 427.557