Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02409 ATGAGTAGAGATATTTGTAGAAATTTCCAGCGAGGCAGCTGTAAATATGGAGATAGGTGTAGATTTATTCATCAACAACAACAACAGCAAAGATCTAATAATGGAGGGTTTGGAGTACAGCATAATACTAACCCTTTTGGATTTGGGTCTGCCTCTGCTTCTGCCCCTAACAACCACCAAAAGACCAACCCTTTTGGTTTTGGAACTCAAAATACCTCCCACTCAAATGCGCCACCTCGTTCCGACTACAAACCTAACCAATTTCAGCCTTTTGAAAACAAATGGAGTCGATCTTCATCCAAACCTCAAAATGGCACTCCACGTCAGTCAGATAACAATTCCCAAGGAGTGAATCATAAATGCACAGATCCTGAGGTTTGCAAGCGCCAGATTGTAGAAGATTTTCAGCAGGAGAAACCACTTTGGATACTTACATGCTATGGTCATTGCAAAGGCGCTCCTTGTGACATTCTTGGAGATATTAGCTATGAAGAATTACGGGCAGCGGCTTATGAGGATGCCAGGAATGGAATGAGTTTGCCATCAATTGTTGAGAAAGAGAGAAACATACTAAAATCCAAGTCGGCTGAGTTTGACAAACTACTTTCTGAACCCTACAAAATGCCTCTGAATTCTTCTCTTGACATTCAAAACTACCAATCCAATGGCGCCAATGCAAATACATTTTCACCAGCCACTCAAAACTACCAATCTAATGGGGCCAATGCAAATGCATTTTCACGAGCCACTCAAAATTACCAATCTAATGGAGCCAATGCAAATGCATTTTCACCAGCCACTCAAAACAATGGTCCTTTATCAGTCTCAAGCTTTAGCCAACTGGGTGCTTCACTGAACACTGGTTTTGAAAGGCCCTCTGCACCACAAATGACCACTCCAGCGCAGCCTGGCTCCTTTGGAAATGGAGGAAACTTTTTCGGATCCAACACACAGCATCTATTCGGAAGTGGAATCTCAGGTGCTCAAAGCAACCCCTTTTCTACACCAGCGGAGTTTACAATGTTTCCAGGTTCAACTTCACAGTTCCAACAAGCATCCACTGTGTTCAATAACACTAGCTCCACTACAATGCTTCCAACAACATCAGATGTTCAGCTAAACACGTCCCAAGTGGAGAATGCGTCTGTAGATGAGAGTATCTGGTTAAAGGAGAAATGGATTCCTGGAGAGATTCCAGAAGTACCTCCTCCAGATAGATTTATTCAGGATGTGAAATAG 1239 0.4278 MSRDICRNFQRGSCKYGDRCRFIHQQQQQQRSNNGGFGVQHNTNPFGFGSASASAPNNHQKTNPFGFGTQNTSHSNAPPRSDYKPNQFQPFENKWSRSSSKPQNGTPRQSDNNSQGVNHKCTDPEVCKRQIVEDFQQEKPLWILTCYGHCKGAPCDILGDISYEELRAAAYEDARNGMSLPSIVEKERNILKSKSAEFDKLLSEPYKMPLNSSLDIQNYQSNGANANTFSPATQNYQSNGANANAFSRATQNYQSNGANANAFSPATQNNGPLSVSSFSQLGASLNTGFERPSAPQMTTPAQPGSFGNGGNFFGSNTQHLFGSGISGAQSNPFSTPAEFTMFPGSTSQFQQASTVFNNTSSTTMLPTTSDVQLNTSQVENASVDESIWLKEKWIPGEIPEVPPPDRFIQDVK 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02409 412 Gene3D - 1 77 - -
Trre8g02409 412 MobiDBLite consensus disorder prediction 25 119 - -
Trre8g02409 412 SUPERFAMILY CCCH zinc finger 3 28 IPR036855 GO:0046872
Trre8g02409 412 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 3 24 IPR000571 GO:0046872
Trre8g02409 412 PANTHER NUCLEOPORIN-LIKE PROTEIN 2 5 408 - -
Trre8g02409 412 SMART c3hfinal6 1 26 IPR000571 GO:0046872
Trre8g02409 412 ProSiteProfiles Zinc finger C3H1-type profile. 1 27 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02409 Trre-Chr8 19453803 19459503 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre8g02409 zf-CCCH 4.4e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02409 K14321 - gmx:100814339 464.151