Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02401 ATGGGTTGTTTATGTTCCAAGAGTTCAGCTGTAGAAGACAACAATGAAAGTATATCAAAGAAATTGCAATCAAGTAGCACAAGAACTTCAGAGTTGAATGTTTTGAGGTTGAATTCTTCCAAGAGGGTTGAAGGTGGAGTTGATGTGAAAGTGAAAGCTTCATTCAATGAAAAGAAATCCAATGGTTCAGTGCACTTGTATGATGATCAAAATGGGAGGAAGAAGAAAATTGACAAGACTGAATTAACTGTTATTGATCATCCTGGTCTTGGAAGGGTTCCAAAGGCTATAGAAGGCGAACAAGTTTCCGCTGGTTGGCCGGCTTGGCTTTCTTCTGTTGCTGGTGATGCCATCAAAGGATGGATACCGCGAAGTGCGGATACTTTTGAGAGGTTACATAAAATTGGGCAAGGAACTTATAGTACTGTTTATAAGGCTCGTGACGTGACTAATCAGAAGATTGTTGCATTAAAGAAGGTGCGGTTTGATAATCTTGATCCCGAGAGTGTCAAGTTTATGGCAAGAGGAATACATATTCTGCGTAGGCTCGACCATCCAAACATAATAAAACTGGAGGGGTTGATAACATCAGAAAATTCTCGCAGCTTGTACCTTGTTTTTGAGTATATGGAACATGACCTAACAGGACTTACATCAAATCCGAGCATCAAATTTTCTGAATCACAGCTGAAATGCTACATGCATCAACTTCTTAGTGGATTGGATCATTGTCATAGTCATGGTGTCCTCCACCGAGACATAAAGGGCTCAAATCTTCTCATCGACAATAATGGTGTTTTAAAGATTGCCGATTTTGGCTTGGCAAATGTTTTTGACTCCCATCACAATATTCCATTGACTAGCCGTGTAGTAACTCTGTGGTATAGACCACCTGAACTTTTACTTGGAGCGAATCATTATGGGGTTGCAGTCGATTTATGGAGCACTGGTTGTATACTGGGAGAACTATATACAGGCCGGCCCATTTTGCCCGGAAAAACTGAGGTTGAGCAGTTGCATCGGATTTTTAAACTTTGCGGCTCACCGTCTGAGGACTATTGGCTTAAGTTGCGGTTGCCACATTCAACAGTATTCAAGCCTCCACACCATTATAGGCGATGTGTTGCGGATACGTTTAAGGAATATTCATCAACTGCTCTTAAGCTTATAGAGACCCTACTTTCTGTAGATCCGTCACAACGAGGGACAGCAGCTGCTGCTCTGAAAAGTGAGTTCTTTACATCAGAACCTTTGCCTTGTGATCCATCAAGTTTACCAAAATATCCTCCTAGCAAAGAGATTGACGCTAAAATGCGTGATGAAGCAACCAGAAGGAAAGGAGCTGTTGGAGAGAGGGAGCAAAAAGTTGGCTCAGCGGTTAGACAAGAAAAAGGACCTAGGGCCGTTGTCTCAACAAAAGACAACGCTAACTTGGGCGCATCAATACAGCAAGTCAAGCCTTATTCCATCTCAAAGAACCGAAGCGAATTGTCATATCCTCATAGAGAACATGTGTCCGGGAGTCATGGTTTCCCACACAAACAATCCGAAGATGTTAAAGAAACAGAAAATAATTTATCTGGCCACTTTTATAGGAGACCTTCACATTCAGGCCCATTGGTTCCTGGTTCTGGCTGGCCCAGGGGGGTCAAGGACGTTGATAACGGGCCTCCTGTTTCAAACAGAGTGAACCTAGCAAAACTATCCGGGCTTGTAGCATCTAGGACTTTGTTGTCGGAAGATCAGGAGCCAAAACCAGTTCCCTTTTTCCACAGAAAACCAATTGAAGTAAGAAAATCCGTTGAGGCGACTAATGGATCTGAGTCAAGAAGAAGGCGGGATAAAAAACGAATAGTTGATCACAGTCAAATTGTAAATAGAAGAGTCCCAACTGAAAAATCAACTCCGGATGGACACGGATCAAGTGGAAACAAGATATACATGTCAGGTCCGTTACTGGCTTCAAACAATATGGATCAAATGCTCAAAGACCACGATCGTAAGATCCAAGAGTTTTCAAGACGAGCAAGAGGTGAGAAAGTACGCACACAAAGAAAGTAG 2061 0.4246 MGCLCSKSSAVEDNNESISKKLQSSSTRTSELNVLRLNSSKRVEGGVDVKVKASFNEKKSNGSVHLYDDQNGRKKKIDKTELTVIDHPGLGRVPKAIEGEQVSAGWPAWLSSVAGDAIKGWIPRSADTFERLHKIGQGTYSTVYKARDVTNQKIVALKKVRFDNLDPESVKFMARGIHILRRLDHPNIIKLEGLITSENSRSLYLVFEYMEHDLTGLTSNPSIKFSESQLKCYMHQLLSGLDHCHSHGVLHRDIKGSNLLIDNNGVLKIADFGLANVFDSHHNIPLTSRVVTLWYRPPELLLGANHYGVAVDLWSTGCILGELYTGRPILPGKTEVEQLHRIFKLCGSPSEDYWLKLRLPHSTVFKPPHHYRRCVADTFKEYSSTALKLIETLLSVDPSQRGTAAAALKSEFFTSEPLPCDPSSLPKYPPSKEIDAKMRDEATRRKGAVGEREQKVGSAVRQEKGPRAVVSTKDNANLGASIQQVKPYSISKNRSELSYPHREHVSGSHGFPHKQSEDVKETENNLSGHFYRRPSHSGPLVPGSGWPRGVKDVDNGPPVSNRVNLAKLSGLVASRTLLSEDQEPKPVPFFHRKPIEVRKSVEATNGSESRRRRDKKRIVDHSQIVNRRVPTEKSTPDGHGSSGNKIYMSGPLLASNNMDQMLKDHDRKIQEFSRRARGEKVRTQRK 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02401 686 Pfam Protein kinase domain 129 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g02401 686 SUPERFAMILY Protein kinase-like (PK-like) 122 421 IPR011009 -
Trre8g02401 686 Gene3D Transferase(Phosphotransferase) domain 1 212 451 - -
Trre8g02401 686 PANTHER CELL DIVISION PROTEIN KINASE 127 419 - -
Trre8g02401 686 ProSitePatterns Serine/Threonine protein kinases active-site signature. 249 261 IPR008271 GO:0004672|GO:0006468
Trre8g02401 686 SMART serkin_6 129 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g02401 686 MobiDBLite consensus disorder prediction 8 27 - -
Trre8g02401 686 ProSitePatterns Protein kinases ATP-binding region signature. 135 158 IPR017441 GO:0005524
Trre8g02401 686 MobiDBLite consensus disorder prediction 496 527 - -
Trre8g02401 686 FunFam probable serine/threonine-protein kinase At1g54610 116 211 - -
Trre8g02401 686 MobiDBLite consensus disorder prediction 600 627 - -
Trre8g02401 686 FunFam probable serine/threonine-protein kinase At1g54610 212 453 - -
Trre8g02401 686 Gene3D Phosphorylase Kinase; domain 1 116 211 - -
Trre8g02401 686 CDD STKc_CDK9_like 129 413 - -
Trre8g02401 686 MobiDBLite consensus disorder prediction 660 678 - -
Trre8g02401 686 MobiDBLite consensus disorder prediction 440 460 - -
Trre8g02401 686 MobiDBLite consensus disorder prediction 1 27 - -
Trre8g02401 686 MobiDBLite consensus disorder prediction 494 558 - -
Trre8g02401 686 MobiDBLite consensus disorder prediction 635 656 - -
Trre8g02401 686 ProSiteProfiles Protein kinase domain profile. 129 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g02401 686 MobiDBLite consensus disorder prediction 600 686 - -
Trre8g02401 686 MobiDBLite consensus disorder prediction 440 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02401 Trre-Chr8 19390967 19394872 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02401 121 454 Core Cell Cycle Gene Families AT5G10270 49.143 1.83e-112 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Trre8g02401 Pkinase 1.8e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02401 - - gmx:100807590 1077.77