Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02393 ATGAGAGGAAGTGATAAACCTTCTAGCTCTACACCCAAAGTTGAAAGAAGACTGGTCGAGAAAAATAGAAGAAATCAGATGAAGATCCTTTACTCCAAACTCAACTCTCTTCTCCCTAATTATAATCCCAAGGAAATGACGTTGCCCTTACCGGACCAAGTAGATGAGGCAATAAACTACATAAAGAGTTTAGAGGCAAATGTGAAGATGGCTAAGGAGAAGAAAGAGATGTTATTAGAGGGAAAGAAAAAAAGATCGCGTGAATATTGTTTGGATCTACCAAAATTGTCACGTTTTGAAATTTACGAAAATGGTTCTTCTCTACAAATCATTCTCATGTGTGGGTTAGATGACCAGTTCATTTTCTATGAAATCATTCGCGTGTTGCATGAAGAGAATATAGACGTTAGAAGTGTCAATTCTTCAACTGTTGGAGATAATTCACTCCTTCATGTCGTGCATTCTGAGATTCCTCAATCTTGTGTTCAATTTGGAGCGACGAAAGTGAGTGAGAGATTAAAAAGATTTGTGAATGGATCATCCAGTGATGTAGAAATGCAGCCTGATGATTTGTGGGATTTTGAAATTGAAACTGATTTGTGGGGTTTAATTTCTAGCTAG 621 0.372 MRGSDKPSSSTPKVERRLVEKNRRNQMKILYSKLNSLLPNYNPKEMTLPLPDQVDEAINYIKSLEANVKMAKEKKEMLLEGKKKRSREYCLDLPKLSRFEIYENGSSLQIILMCGLDDQFIFYEIIRVLHEENIDVRSVNSSTVGDNSLLHVVHSEIPQSCVQFGATKVSERLKRFVNGSSSDVEMQPDDLWDFEIETDLWGLISS 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02393 206 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 11 81 IPR036638 GO:0046983
Trre8g02393 206 Coils Coil 54 81 - -
Trre8g02393 206 Pfam Helix-loop-helix DNA-binding domain 14 65 IPR011598 GO:0046983
Trre8g02393 206 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 11 64 IPR011598 GO:0046983
Trre8g02393 206 FunFam Transcription factor bHLH162 4 90 - -
Trre8g02393 206 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 9 177 - -
Trre8g02393 206 Gene3D - 2 92 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02393 Trre-Chr8 19319690 19320583 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02393 1 179 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 38.542 2.34e-29 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre8g02393 HLH 1.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02393 - - tpra:123913718 356.295