Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02392 ATGGATCAAATGAGAGGAAGTGATAAACCTTCTAGCTCTACACCCAAAGTTGAAAGAAGACTGGTCGAGAAAAATAGAAGAAATCAGATGAAGATCCTTTACTCCAAACTCAACTCTCTTCTCCCTAATTATAATCCCAAGGAAATGACGTTGCCCTTACCGGACCAAGTAGATGAGGCAATAAACTACATAAAGAGTTTAGAGGCAAATGTGAAGATGGCTAAGGAGAAGAAAGAGATGTTATTAGAGGGAAAGAAAAAAAGATCGCGTGAATATTGTTTGGATCTACCAAAATTGTCACGTTTTGAAATTTACGAAAATGGTTCTTCTCTACAAATCATTCTCATGTGTGGGTTAGATGACCAGTTCATTTTCTATGAAATCATTCGCGTGTTGCATGAAGAGAATATAGACGTTAGAAGTGTCAATTCTTCAACTGTTGGAGATAATTCACTCCTTCATGTCGTGCATTCTGAGATTCCTCAATCTTGTGTTCAATTTGGAGCGACGAAAGTGAGTGAGAGATTAAAAAGATTTGTGAATGGATCATCCAGTGATGTAGAAATGCAGCCTGATGATTTGTGGGATTTTGAAATTGAAACTGATTTGTGGGGTTTAATTTCTAGCTAG 630 0.3714 MDQMRGSDKPSSSTPKVERRLVEKNRRNQMKILYSKLNSLLPNYNPKEMTLPLPDQVDEAINYIKSLEANVKMAKEKKEMLLEGKKKRSREYCLDLPKLSRFEIYENGSSLQIILMCGLDDQFIFYEIIRVLHEENIDVRSVNSSTVGDNSLLHVVHSEIPQSCVQFGATKVSERLKRFVNGSSSDVEMQPDDLWDFEIETDLWGLISS 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02392 209 Pfam Helix-loop-helix DNA-binding domain 17 68 IPR011598 GO:0046983
Trre8g02392 209 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 14 84 IPR036638 GO:0046983
Trre8g02392 209 Gene3D - 5 95 IPR036638 GO:0046983
Trre8g02392 209 MobiDBLite consensus disorder prediction 1 22 - -
Trre8g02392 209 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 14 67 IPR011598 GO:0046983
Trre8g02392 209 FunFam Transcription factor bHLH162 7 93 - -
Trre8g02392 209 Coils Coil 57 84 - -
Trre8g02392 209 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 12 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02392 Trre-Chr8 19319690 19320592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02392 4 182 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 38.542 2.34e-29 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre8g02392 HLH 1.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02392 - - tpra:123913718 362.459