Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02380 ATGTCGCTGCAGACTCTGAAAGAAACACTCAGACATTGCACAACTCAACAATCACAATCACAACCATCTTCTTCTTCTTCTTCTTCTTCTTCATCTCAATCCATTCTCAACGATTTCGATACCAATTTCCCAATTTACAGAAAACCCCCAAAAGCCTCTCTTGCCGACCAACTTCGCCTCTTTGACGACCCACCCTTTCAGCCCCACGATTTTCTTTCCCAACAAAACGACTCCAAAACCTCACAAGTTCAACTAGACCTAGAAGAAGAGGAGGAAGACGAAGAAGAAGAAGATGATGAAGAGCCGGAGATAAAGAGGGTCAAATTCAGTTCAGCCAAATCTTCTCAGTTTCAATTCGATCATACTGGACTCTTTGAGCCTTTGGTCTTGTCTTCGGATGGAGAACTTCCTTTAGTTCAGGTTCCTGCATCTATAAACTGTAGACTGCTTGAGCATCAGAGAGTGGGAGTTAAGTTTCTTTATGATTTGTACAAGAACAATCATGGGGGCATCCTTGGAGATGACATGGGTCTTGGAAAGACCATTCAAACAATAGCATTTCTTGCTGCCATATTTGGTAAAGAAGGGGACTCCGTTCTAACTGACAAGCGAGTGGAGAAAAGAGACCCTGTATTAATAATTTGCCCATCATCCATTATTCAAAATTGGGAGAGTGAATTCTCTAAGTGGTCCAACTTCAGCGTTTCCATTTATCACGGTGCAAACCGCGATTTGGTATATGATAAACTGGAAGCAAATGGAGTGGAGGTACTTATTACCAGTTTTGACACATTCAGGATTTATGGCGACAGTTCCTTGTCAGATATCCACTGGAGTATTGTGATTATTGATGAGGCTCATCGACTTAAGAACTGGAAATCAAAACTCTATAATGCATGTTTAAAAATTAAAACCCTGCGACGATATGGTCTTACTGGGACCGTAATGCAAAATAAGATCTTAGAATTGTTCAATATCTTTGATTTGGTTGCACCTGGATCCCTTGGAACACGGGAACACTTCCGTGAGTATTATGATGAACCCCTTAAACATGGTCAGAGGTCAACTGCTCCTGATAGGTTTGTTCAAATTGCTAATAAGAGAAAACAACACCTTGTTGCAGTTCTTAATAAATATATGTTGAGAAGGACAAAGGAAGAAACAATAGGGCATCTTATGATGGGGAAGGAAGATAACATTGTTTTTTGTGCAATGAGTGATTTACAAAAACGTGTTTACAGGAGAATGATCCAGCTTCCTGATATTCAGTGCCTTATAAATAAGGACCGACCTTGTAGTTGTGGTAGTCCTCTCACTCAAGCTGAATGTTGCAAAAGGACGGTACCAGATGGAGCTATTTGGCCTTACCTTCACAAAGATAACCTGGATGATGGATGTGATTCATGCCCCTTTTGCATTGTCCTTCCATGCCTTGTCAAGCTACAACAGATAAGCAATCACCTTGAGCTGATTAAGCCAAACCCCAAAGATGACCTAGAGAAACAAGTTAAAGATGCAAATTTTGCTGCTGCTGTCTATGGCCAAGACATTGACTTAGTTGGTGGGAACATGCAGAATGAGAGTTTCCTGAGTCTAAGTGATACAAAACATTGTGGCAAAATGCGAGCACTGGAAAAGCTATTATTGTCATGGTTTTCAAATGGAGACAAAGTTCTCTTGTTTAGCTATTCTGTAAGGATGTTGGACATACTAGAGAAATTTATCATACGAAAAGGCTATTGCTTCTCAAGACTTGATGGATCCACTCCAACTAATTTACGTCAGTCTCTGGTTGATGATTTCAACTCTAGTCCGAGCAAACAAGTGTTCCTGATATCAACTCGTGCTGGTGGGCTTGGATTGAACCTGGTTAGTGCGAACCGTGTTGTAATATTTGATCCCAACTGGAATCCTTCACAAGACTTACAGGCTCAGGACAGGTCCTTTCGATTTGGACAGAAACGGCATGTTGTGGTATTCCGTCTTCTCTCGGCTGGTTCACTTGAAGAACTAATTTATTCTCGTCAGGTGTACAAGCAGCAGTTATCAAACATTGCTGTCTCTGGAAAGATGGAAAAACGATATTTTGAAGGTGTCCAGGACTGCAAAGAATTTAAAGGGGAACTTTTTGGAATTTGCAATTTATTTCGAGATTTATCTGATAAACTGTTTACCAGTGAGATCATTGAAATGCATGAGACGAGTAAAAAAGACGATGGGCTTAAAACAGAACAACAGAAAAAAATAAATATTTCAGAAGAAACAAGTTTATCAGACACAGAGCCTGAAACAAGTAAACCAGATATTGAATTTGAAGACCTCGGCATAGTTTACGCTCATCGCAATGAAGACATTGTCAACTCTCGACCAGTGATTCAAGGGCAGTTTTCTACCAGCAGCACCCCTTCAAGTGATGACCTATGCAGGCCAAGCATCTCTGTGGTCCATCAAAAGGAAAAACCAGATTGTGTACCTAAAACAGTGAAAGTTACTTTGATTGATGAAAGAAAGAGAGCACAGTTTAGCCTTCTTGCAGAGTCTATGGGCATGGGAGAGCTTGCATTCAGCAAATGGTTACTATCAGCCACTCCAGAAGAGAGAAAAAAAGTGCTTATAGACTCTAAGAAGAAAAAGAAAAAGACTAAAGGTTGA 2652 0.4046 MSLQTLKETLRHCTTQQSQSQPSSSSSSSSSSQSILNDFDTNFPIYRKPPKASLADQLRLFDDPPFQPHDFLSQQNDSKTSQVQLDLEEEEEDEEEEDDEEPEIKRVKFSSAKSSQFQFDHTGLFEPLVLSSDGELPLVQVPASINCRLLEHQRVGVKFLYDLYKNNHGGILGDDMGLGKTIQTIAFLAAIFGKEGDSVLTDKRVEKRDPVLIICPSSIIQNWESEFSKWSNFSVSIYHGANRDLVYDKLEANGVEVLITSFDTFRIYGDSSLSDIHWSIVIIDEAHRLKNWKSKLYNACLKIKTLRRYGLTGTVMQNKILELFNIFDLVAPGSLGTREHFREYYDEPLKHGQRSTAPDRFVQIANKRKQHLVAVLNKYMLRRTKEETIGHLMMGKEDNIVFCAMSDLQKRVYRRMIQLPDIQCLINKDRPCSCGSPLTQAECCKRTVPDGAIWPYLHKDNLDDGCDSCPFCIVLPCLVKLQQISNHLELIKPNPKDDLEKQVKDANFAAAVYGQDIDLVGGNMQNESFLSLSDTKHCGKMRALEKLLLSWFSNGDKVLLFSYSVRMLDILEKFIIRKGYCFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPSQDLQAQDRSFRFGQKRHVVVFRLLSAGSLEELIYSRQVYKQQLSNIAVSGKMEKRYFEGVQDCKEFKGELFGICNLFRDLSDKLFTSEIIEMHETSKKDDGLKTEQQKKINISEETSLSDTEPETSKPDIEFEDLGIVYAHRNEDIVNSRPVIQGQFSTSSTPSSDDLCRPSISVVHQKEKPDCVPKTVKVTLIDERKRAQFSLLAESMGMGELAFSKWLLSATPEERKKVLIDSKKKKKKTKG 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02380 883 Gene3D - 395 761 IPR027417 -
Trre8g02380 883 Gene3D - 128 382 IPR038718 -
Trre8g02380 883 SMART helicmild6 569 652 IPR001650 -
Trre8g02380 883 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 279 288 IPR002464 -
Trre8g02380 883 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 387 708 IPR027417 -
Trre8g02380 883 SMART ultradead3 145 341 IPR014001 -
Trre8g02380 883 MobiDBLite consensus disorder prediction 1 105 - -
Trre8g02380 883 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 543 696 IPR001650 -
Trre8g02380 883 MobiDBLite consensus disorder prediction 734 765 - -
Trre8g02380 883 FunFam DNA excision repair protein ERCC-6-like 2 isoform X1 130 382 - -
Trre8g02380 883 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 161 333 IPR014001 -
Trre8g02380 883 Pfam Helicase conserved C-terminal domain 540 652 IPR001650 -
Trre8g02380 883 PANTHER SNF2/RAD54 FAMILY MEMBER 22 810 - -
Trre8g02380 883 Pfam SNF2-related domain 165 423 IPR000330 GO:0005524|GO:0140658
Trre8g02380 883 CDD SF2_C_SNF 534 663 - -
Trre8g02380 883 MobiDBLite consensus disorder prediction 86 101 - -
Trre8g02380 883 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 135 383 IPR027417 -
Trre8g02380 883 MobiDBLite consensus disorder prediction 734 749 - -
Trre8g02380 883 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02380 Trre-Chr8 19203083 19209141 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02380 168 693 RAD5 or RAD16-like Gene Family AT5G05130 25.487 8.61e-39 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre8g02380 SNF2_N 1.7e-54 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02380 K20098 - gmx:100781003 1304.27