Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02379 ATGTCGCTGCAGACTCTGAAAGAAACACTCAGACATTGCACAACTCAACAATCACAATCACAACCATCTTCTTCTTCTTCTTCTTCTTCTTCATCTCAATCCATTCTCAACGATTTCGATACCAATTTCCCAATTTACAGAAAACCCCCAAAAGCCTCTCTTGCCGACCAACTTCGCCTCTTTGACGACCCACCCTTTCAGCCCCACGATTTTCTTTCCCAACAAAACGACTCCAAAACCTCACAAGTTCAACTAGACCTAGAAGAAGAGGAGGAAGACGAAGAAGAAGAAGATGATGAAGAGCCGGAGATAAAGAGGGTCAAATTCAGTTCAGCCAAATCTTCTCAGTTTCAATTCGATCATACTGGACTCTTTGAGCCTTTGGTCTTGTCTTCGGATGGAGAACTTCCTTTAGTTCAGGTTCCTGCATCTATAAACTGTAGACTGCTTGAGCATCAGAGAGTGGGAGTTAAGTTTCTTTATGATTTGTACAAGAACAATCATGGGGGCATCCTTGGAGATGACATGGGTCTTGGAAAGACCATTCAAACAATAGCATTTCTTGCTGCCATATTTGGTAAAGAAGGGGACTCCGTTCTAACTGACAAGCGAGTGGAGAAAAGAGACCCTGTATTAATAATTTGCCCATCATCCATTATTCAAAATTGGGAGAGTGAATTCTCTAAGTGGTCCAACTTCAGCGTTTCCATTTATCACGGTGCAAACCGCGATTTGGTATATGATAAACTGGAAGCAAATGGAGTGGAGGTACTTATTACCAGTTTTGACACATTCAGGATTTATGGCGACAGTTCCTTGTCAGATATCCACTGGAGTATTGTGATTATTGATGAGGCTCATCGACTTAAGAACTGGAAATCAAAACTCTATAATGCATGTTTAAAAATTAAAACCCTGCGACGATATGGTCTTACTGGGACCGTAATGCAAAATAAGATCTTAGAATTGTTCAATATCTTTGATTTGGTTGCACCTGGATCCCTTGGAACACGGGAACACTTCCGTGAGTATTATGATGAACCCCTTAAACATGGTCAGAGGTCAACTGCTCCTGATAGGAGAATGATCCAGCTTCCTGATATTCAGTGCCTTATAAATAAGGACCGACCTTGTAGTTGTGGTAGTCCTCTCACTCAAGCTGAATGTTGCAAAAGGACGGTACCAGATGGAGCTATTTGGCCTTACCTTCACAAAGATAACCTGGATGATGGATGTGATTCATGCCCCTTTTGCATTGTCCTTCCATGCCTTGTCAAGCTACAACAGATAAGCAATCACCTTGAGCTGATTAAGCCAAACCCCAAAGATGACCTAGAGAAACAAGTTAAAGATGCAAATTTTGCTGCTGCTGTCTATGGCCAAGACATTGACTTAGTTGGTGGGAACATGCAGAATGAGAGTTTCCTGAGTCTAAGTGATACAAAACATTGTGGCAAAATGCGAGCACTGGAAAAGCTATTATTGTCATGGTTTTCAAATGGAGACAAAGTTCTCTTGTTTAGCTATTCTGTAAGGATGTTGGACATACTAGAGAAATTTATCATACGAAAAGGCTATTGCTTCTCAAGACTTGATGGATCCACTCCAACTAATTTACGTCAGTCTCTGGTTGATGATTTCAACTCTAGTCCGAGCAAACAAGTGTTCCTGATATCAACTCGTGCTGGTGGGCTTGGATTGAACCTGGTTAGTGCGAACCGTGTTGTAATATTTGATCCCAACTGGAATCCTTCACAAGACTTACAGGCTCAGGACAGGTCCTTTCGATTTGGACAGAAACGGCATGTTGTGGTATTCCGTCTTCTCTCGGCTGGTTCACTTGAAGAACTAATTTATTCTCGTCAGGTGTACAAGCAGCAGTTATCAAACATTGCTGTCTCTGGAAAGATGGAAAAACGATATTTTGAAGGTGTCCAGGACTGCAAAGAATTTAAAGGGGAACTTTTTGGAATTTGCAATTTATTTCGAGATTTATCTGATAAACTGTTTACCAGTGAGATCATTGAAATGCATGAGACGAGTAAAAAAGACGATGGGCTTAAAACAGAACAACAGAAAAAAATAAATATTTCAGAAGAAACAAGTTTATCAGACACAGAGCCTGAAACAAGTAAACCAGATATTGAATTTGAAGACCTCGGCATAGTTTACGCTCATCGCAATGAAGACATTGTCAACTCTCGACCAGTGATTCAAGGGCAGTTTTCTACCAGCAGCACCCCTTCAAGTGATGACCTATGCAGGCCAAGCATCTCTGTGGTCCATCAAAAGGAAAAACCAGATTGTGTACCTAAAACAGTGAAAGTTACTTTGATTGATGAAAGAAAGAGAGCACAGTTTAGCCTTCTTGCAGAGTCTATGGGCATGGGAGAGCTTGCATTCAGCAAATGGTTACTATCAGCCACTCCAGAAGAGAGAAAAAAAGTGCTTATAGACTCTAAGAAGAAAAAGAAAAAGACTAAAGGTTGA 2490 0.4096 MSLQTLKETLRHCTTQQSQSQPSSSSSSSSSSQSILNDFDTNFPIYRKPPKASLADQLRLFDDPPFQPHDFLSQQNDSKTSQVQLDLEEEEEDEEEEDDEEPEIKRVKFSSAKSSQFQFDHTGLFEPLVLSSDGELPLVQVPASINCRLLEHQRVGVKFLYDLYKNNHGGILGDDMGLGKTIQTIAFLAAIFGKEGDSVLTDKRVEKRDPVLIICPSSIIQNWESEFSKWSNFSVSIYHGANRDLVYDKLEANGVEVLITSFDTFRIYGDSSLSDIHWSIVIIDEAHRLKNWKSKLYNACLKIKTLRRYGLTGTVMQNKILELFNIFDLVAPGSLGTREHFREYYDEPLKHGQRSTAPDRRMIQLPDIQCLINKDRPCSCGSPLTQAECCKRTVPDGAIWPYLHKDNLDDGCDSCPFCIVLPCLVKLQQISNHLELIKPNPKDDLEKQVKDANFAAAVYGQDIDLVGGNMQNESFLSLSDTKHCGKMRALEKLLLSWFSNGDKVLLFSYSVRMLDILEKFIIRKGYCFSRLDGSTPTNLRQSLVDDFNSSPSKQVFLISTRAGGLGLNLVSANRVVIFDPNWNPSQDLQAQDRSFRFGQKRHVVVFRLLSAGSLEELIYSRQVYKQQLSNIAVSGKMEKRYFEGVQDCKEFKGELFGICNLFRDLSDKLFTSEIIEMHETSKKDDGLKTEQQKKINISEETSLSDTEPETSKPDIEFEDLGIVYAHRNEDIVNSRPVIQGQFSTSSTPSSDDLCRPSISVVHQKEKPDCVPKTVKVTLIDERKRAQFSLLAESMGMGELAFSKWLLSATPEERKKVLIDSKKKKKKTKG 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02379 829 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 279 288 IPR002464 -
Trre8g02379 829 PANTHER SNF2/RAD54 FAMILY MEMBER 361 756 - -
Trre8g02379 829 Gene3D - 128 371 IPR038718 -
Trre8g02379 829 SMART ultradead3 145 341 IPR014001 -
Trre8g02379 829 CDD SF2_C_SNF 480 609 - -
Trre8g02379 829 MobiDBLite consensus disorder prediction 1 105 - -
Trre8g02379 829 MobiDBLite consensus disorder prediction 680 695 - -
Trre8g02379 829 Pfam SNF2-related domain 165 365 IPR000330 GO:0005524|GO:0140658
Trre8g02379 829 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 489 642 IPR001650 -
Trre8g02379 829 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 161 333 IPR014001 -
Trre8g02379 829 SMART helicmild6 515 598 IPR001650 -
Trre8g02379 829 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 277 651 IPR027417 -
Trre8g02379 829 Gene3D - 415 710 IPR027417 -
Trre8g02379 829 FunFam DNA excision repair protein ERCC-6-like 2 isoform X1 130 367 - -
Trre8g02379 829 Pfam Helicase conserved C-terminal domain 486 598 IPR001650 -
Trre8g02379 829 MobiDBLite consensus disorder prediction 86 101 - -
Trre8g02379 829 MobiDBLite consensus disorder prediction 680 711 - -
Trre8g02379 829 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 135 360 IPR027417 -
Trre8g02379 829 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02379 Trre-Chr8 19203083 19209141 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02379 169 628 RAD5 or RAD16-like Gene Family AT1G02670 26.204 2.96e-32 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre8g02379 SNF2_N 3.1e-44 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02379 K20098 - cave:132182799 1033.48