Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02375 ATGGCTTCAACTTCATCTTCTCATTCCTTAACCACTTGTCTCTTATTCCTGTTTTTTCTATATTTATCTTGTTTCTTCAACAACCTTAATGCAAAACACAGCATAACCAACATTCACAAGAACCAGCATAGGCACAATAAGCATCTCCATAATCCACCATTAAACCTAAGACTCTACCGCGCTTTTCTCGGGCTGCAAGCATGGAAACATGTGATCTACTCAGACCCAAAAAACATCACTACCAATTGGGTAGGTCCTTCAGTTTGCAACTATACAGGTATTTACTGTGCTCCATCTCTTGATGATCCTAAACTAACTGTTGTTGCCGGCATTGACCTTAATCATGCAGACATAGCCGGTTTTCTACCCGACGAATTAGCCTTCCTAAGTGACCTTTCACTTCTCCACCTCAATAGCAACCGTTTCTGCGGCATCATTCCAAAAACCTTCACCAACCTAACTCATCTCTATGAGCTTGACCTTAGCAACAACAGATTCGTTGGACCTTTTCCTTCGGTCGTTCTTTCACTTCCTTCCCTTACCTACCTCGACCTTCGTTACAACGAATTCGAAGGTTCATTACCTCCTCAGCTTTTCGACAAACCTTTCGATGCTTTTTTCCTTAACAACAATCGCTTCACAAGTTCTATTCCAAGAAATTTAGGGAAAAGCAAAGCTTCTGTCATGGTTTTCGCTAATAACAAATTTGGAGGATGTTTACCAGAAAGCATAGTAAATTTCGCCGATACTTTAGAAGAACTTCTCTTAATCAACACAAGCATTTCAGGTTGTCTTCCACAACAAGTTGGTTTTCTATACAAATTAAGAGTTTTAGATGTGAGTTTCAACAATATTGTTGGTCCTATACCTTATAGTCTTGCAGGGTTATCCCATTTGGAACAGTTAAATTTAGGACATAATATGATGAGTGGAATAGTTCCTATGGGAGTTTGTGAGTTACCAAACTTAGTTAATTTCACTTTTTCTTACAATTTCTTCTGTGAAGAAGAAGGCATTTGTAAGAATTTGACATCAAAGAACATAGTTTTTGATGATCGGCGTAATTGCTTGCCGGAGAAGGCACTGCAGAGAAGTGAAAAGGAATGTAGTCACAAACTTGAACAGCCACCAGTTGATTGCTTTGAGGTTTGTTGTGTTGAAGGTGGTTTTGGGAATAATGTTAGTGCTGGTTCTGTGGCTATTCCACCTTCTGCAATTTCAGCACCAATGCCTGTTTCTGCTGCACCTCTTGTTGCACCAAGTTACCCTTTACCTTAA 1278 0.3959 MASTSSSHSLTTCLLFLFFLYLSCFFNNLNAKHSITNIHKNQHRHNKHLHNPPLNLRLYRAFLGLQAWKHVIYSDPKNITTNWVGPSVCNYTGIYCAPSLDDPKLTVVAGIDLNHADIAGFLPDELAFLSDLSLLHLNSNRFCGIIPKTFTNLTHLYELDLSNNRFVGPFPSVVLSLPSLTYLDLRYNEFEGSLPPQLFDKPFDAFFLNNNRFTSSIPRNLGKSKASVMVFANNKFGGCLPESIVNFADTLEELLLINTSISGCLPQQVGFLYKLRVLDVSFNNIVGPIPYSLAGLSHLEQLNLGHNMMSGIVPMGVCELPNLVNFTFSYNFFCEEEGICKNLTSKNIVFDDRRNCLPEKALQRSEKECSHKLEQPPVDCFEVCCVEGGFGNNVSAGSVAIPPSAISAPMPVSAAPLVAPSYPLP 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02375 425 Gene3D Ribonuclease Inhibitor 228 364 IPR032675 -
Trre8g02375 425 Gene3D Ribonuclease Inhibitor 63 227 IPR032675 -
Trre8g02375 425 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 18 392 - -
Trre8g02375 425 SMART LRR_typ_2 177 201 IPR003591 -
Trre8g02375 425 SMART LRR_typ_2 129 152 IPR003591 -
Trre8g02375 425 SMART LRR_typ_2 272 295 IPR003591 -
Trre8g02375 425 SMART LRR_typ_2 296 319 IPR003591 -
Trre8g02375 425 SUPERFAMILY L domain-like 66 339 - -
Trre8g02375 425 Pfam Leucine rich repeat 132 189 IPR001611 GO:0005515
Trre8g02375 425 Pfam Leucine rich repeat 274 331 IPR001611 GO:0005515
Trre8g02375 425 FunFam Leucine-rich repeat extensin-like protein 1 62 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02375 Trre-Chr8 19156902 19158179 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02375 55 385 Leucine-rich Repeat extension Gene Families AT3G24480 54.683 2.99e-132 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02375 - - gmx:100802803 631.328