Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02373 ATGACCACCGCGCTCCACAACTCCCCCGCTTCCATCGACGATCCTCTCTTTCCCTTTCTCTGGTCAATCAGAAAATCCCTAGACGATTCCACGCCCAATCTCACCAAGTTACTCTCAGATTGCATCTACAAATTCAAGGACAACCACCGCTACCGAAATGATTTCAGATTTCTCAAGATCTGGTTCCTATATATGGATGCTAGTGCTGATTTTGACAGTGTTTTCAAGCAATTGCTGGATAGTAATGTATGTGCAAACGATGCTAAACTTTATGTGTACTCTGCATGTTTTTTTGAAGCAAAGGGTAGATTGCGCGATGCGGGCACCATCTATAAGCTCGGCATTTCCAAAAATGCCGAGCCAATTAAGTGGTTGAAGGAGGCATTTACCTTATTTCTCAGTAGAATGTCTGAAATATGTAATGCCGCTTCAAGCCAGAAGGCTGAATATAAAGAATCTGCTACATTGGAAAATGATGGCATTAATCCATGGGATACCTCTACTCTGAATGACCTTTTGAAGAAGATAAATCCTTTAATTGCAAAATTTGACGGGTATCATTCGAGCACTAAAGCTTATACAGGAAAAGTGGCCTTATCCACTTTGAAGAATGCATCAAGGAATAAAGTTATAGATATAGGTCGAATGAAGTACCATATCAAGGGTTGTGCTGGACAAGGTGGTTTTGCTCAAGTATACAAGGCAAATGTCAACGGTGACCCTGATGATGTTGTGGCACTAAAGATACAAAAGCCAGCTTTCCCTTGGGAATTTTACATGTATCGTCAGCTTGATCAGCGCATCTCTGGCAGAGAAAGGTCAAGCTATGGTTTCGCTCATGGAATTCATCTCTATTCTGACTGTAGCATACTCGTCTGTGACTATTTAGCTAATGGGACACTTCAGGATGTCATCAACTCATATGTGGTCATAGGAAAATCCATGGAAGAAGTATTGTGCATTTATTACACAACAGAGATGTTGCACATGATTGAAACTCTGCATGATGTTGGCTTGATTCATGGTGATTTCAAGCCTGATAATCTGCTTATACGCTATTCTAGGGGTAACCTCACAGAAGAAGGATTCTTAGACCAAAGCGGTTCTTGGGGTGATCAGGGCCTTTGCCTTGTTGATTGGGGAAGAGGGATTGATCTTCATCTCTTTCCAAATCACACAATATTTAAGGGAGATTGTAGAACTTCTGGTTTCCGATGCATTGAGATGCAGGAGGACAAGCCATGGAAGTTTCAGGCGAATGCATATGGTCTTTGCTGTGTTGTCCATACGATGCTGCATAATTGCTATATGGATATCGTTAAGAAAGAATCATCTGATGGGGGCTCTGTGTACCTTCCCAGACTTCCCTTTAAACGTTACTGGAATGCTGATCTCTGGAAGACTTTCTTCACTAAGATGCTAAATAACTACCCCGGCCATGATGATAAGAAGTTGCTGCAGGAATTGAAGAAGTCCTTCCAGGACTATATGGTCTCTGATCCTCAACGTATAAAGAAACTTAAGGAGTTACTCGCAAAGCAAAGGGTTTCTCTGTGTAATGCTTAA 1566 0.417 MTTALHNSPASIDDPLFPFLWSIRKSLDDSTPNLTKLLSDCIYKFKDNHRYRNDFRFLKIWFLYMDASADFDSVFKQLLDSNVCANDAKLYVYSACFFEAKGRLRDAGTIYKLGISKNAEPIKWLKEAFTLFLSRMSEICNAASSQKAEYKESATLENDGINPWDTSTLNDLLKKINPLIAKFDGYHSSTKAYTGKVALSTLKNASRNKVIDIGRMKYHIKGCAGQGGFAQVYKANVNGDPDDVVALKIQKPAFPWEFYMYRQLDQRISGRERSSYGFAHGIHLYSDCSILVCDYLANGTLQDVINSYVVIGKSMEEVLCIYYTTEMLHMIETLHDVGLIHGDFKPDNLLIRYSRGNLTEEGFLDQSGSWGDQGLCLVDWGRGIDLHLFPNHTIFKGDCRTSGFRCIEMQEDKPWKFQANAYGLCCVVHTMLHNCYMDIVKKESSDGGSVYLPRLPFKRYWNADLWKTFFTKMLNNYPGHDDKKLLQELKKSFQDYMVSDPQRIKKLKELLAKQRVSLCNA 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02373 521 ProSiteProfiles BUB1 N-terminal domain profile. 1 153 IPR013212 -
Trre8g02373 521 Gene3D Transferase(Phosphotransferase) domain 1 216 519 - -
Trre8g02373 521 SMART mad3_bub1_i 1 115 IPR013212 -
Trre8g02373 521 SUPERFAMILY Protein kinase-like (PK-like) 217 445 IPR011009 -
Trre8g02373 521 Pfam Protein kinase domain 219 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g02373 521 PANTHER MITOTIC CHECKPOINT SERINE/THREONINE-PROTEIN KINASE BUB1 145 516 IPR015661 GO:0007094
Trre8g02373 521 ProSiteProfiles Protein kinase domain profile. 218 516 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g02373 521 Pfam Mad3/BUB1 homology region 1 5 115 IPR013212 -
Trre8g02373 521 ProSitePatterns Serine/Threonine protein kinases active-site signature. 339 351 IPR008271 GO:0004672|GO:0006468
Trre8g02373 521 SMART serkin_6 218 497 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g02373 521 Gene3D - 3 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02373 Trre-Chr8 19145966 19151615 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02373 225 408 MAP Kinase Kinase Gene Family AT1G32320 26.425 1.29e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK BUB Trre8g02373 Pkinase 2.6e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02373 K02178 - gmx:100802272 833.943