Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02371 ATGATGACCACCGCGCTCCACAACTCCCCCGCTTCCATCGACGATCCTCTCTTTCCCTTTCTCTGGTCAATCAGAAAATCCCTAGACGATTCCACGCCCAATCTCACCAAGTTACTCTCAGATTGCATCTACAAATTCAAGGACAACCACCGCTACCGAAATGATTTCAGATTTCTCAAGATCTGGTTCCTATATATGGATGCTAGTGCTGATTTTGACAGTGTTTTCAAGCAATTGCTGGATAGTAATGTATGTGCAAACGATGCTAAACTTTATGTGTACTCTGCATGTTTTTTTGAAGCAAAGGGTAGATTGCGCGATGCGGGCACCATCTATAAGCTCGGCATTTCCAAAAATGCCGAGCCAATTAAGTGGTTGAAGGAGGCATTTACCTTATTTCTCAGTAGAATGTCTGAAATATGTAATGCCGCTTCAAGCCAGAAGGCTGAATATAAAGAATCTGCTACATTGGAAAATGATGGCATTAATCCATGGGATACCTCTACTCTGAATGACCTTTTGAAGAAGATAAATCCTTTAATTGCAAAATTTGACGGGTATCATTCGAGCACTAAAGCTTATACAGGAAAAGTGGCCTTATCCACTTTGAAGAATGCATCAAGGAATAAAGTTATAGATATAGGTCGAATGAAGTACCATATCAAGGGTTGTGCTGGACAAGGTGGTTTTGCTCAAGTATACAAGGCAAATGTCAACGGTGACCCTGATGATGTTGTGGCACTAAAGATACAAAAGCCAGCTTTCCCTTGGGAATTTTACATGTATCGTCAGCTTGATCAGCGCATCTCTGGCAGAGAAAGGTCAAGCTATGGTTTCGCTCATGGAATTCATCTCTATTCTGACTGTAGCATACTCGTCTGTGACTATTTAGCTAATGGGACACTTCAGGATGTCATCAACTCATATGTGGTCATAGGAAAATCCATGGAAGAAGTATTGTGCATTTATTACACAACAGAGATGTTGCACATGATTGAAACTCTGCATGATGTTGGCTTGATTCATGGTGATTTCAAGCCTGATAATCTGCTTATACGCTATTCTAGGGGTAACCTCACAGAAGAAGGATTCTTAGACCAAAGCGGTTCTTGGGGTGATCAGGGCCTTTGCCTTGTTGATTGGGGAAGAGGGATTGATCTTCATCTCTTTCCAAATCACACAATATTTAAGGGAGATTGTAGAACTTCTGGTTTCCGATGCATTGAGATGCAGGAGGACAAGCCATGGAAGTTTCAGGCGAATGCATATGGTCTTTGCTGTGTTGTCCATACGATGCTGCATAATTGCTATATGGATATCGTTAAGAAAGAATCATCTGATGGGGGCTCTGTGTACCTTCCCAGACTTCCCTTTAAACGTTACTGGAATGCTGATCTCTGGAAGACTTTCTTCACTAAGATGCTAAATAACTACCCCGGCCATGATGATAAGAAGTTGCTGCAGGAATTGAAGAAGTCCTTCCAGGACTATATGGTCTCTGATCCTCAACGTATAAAGAAACTTAAGGAGTTACTCGCAAAGCAAAGGGTTTCTCTGTGTAATGCTTAA 1569 0.4168 MMTTALHNSPASIDDPLFPFLWSIRKSLDDSTPNLTKLLSDCIYKFKDNHRYRNDFRFLKIWFLYMDASADFDSVFKQLLDSNVCANDAKLYVYSACFFEAKGRLRDAGTIYKLGISKNAEPIKWLKEAFTLFLSRMSEICNAASSQKAEYKESATLENDGINPWDTSTLNDLLKKINPLIAKFDGYHSSTKAYTGKVALSTLKNASRNKVIDIGRMKYHIKGCAGQGGFAQVYKANVNGDPDDVVALKIQKPAFPWEFYMYRQLDQRISGRERSSYGFAHGIHLYSDCSILVCDYLANGTLQDVINSYVVIGKSMEEVLCIYYTTEMLHMIETLHDVGLIHGDFKPDNLLIRYSRGNLTEEGFLDQSGSWGDQGLCLVDWGRGIDLHLFPNHTIFKGDCRTSGFRCIEMQEDKPWKFQANAYGLCCVVHTMLHNCYMDIVKKESSDGGSVYLPRLPFKRYWNADLWKTFFTKMLNNYPGHDDKKLLQELKKSFQDYMVSDPQRIKKLKELLAKQRVSLCNA 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02371 522 PANTHER MITOTIC CHECKPOINT SERINE/THREONINE-PROTEIN KINASE BUB1 146 517 IPR015661 GO:0007094
Trre8g02371 522 ProSiteProfiles Protein kinase domain profile. 219 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g02371 522 ProSitePatterns Serine/Threonine protein kinases active-site signature. 340 352 IPR008271 GO:0004672|GO:0006468
Trre8g02371 522 Gene3D Transferase(Phosphotransferase) domain 1 217 520 - -
Trre8g02371 522 ProSiteProfiles BUB1 N-terminal domain profile. 2 154 IPR013212 -
Trre8g02371 522 Pfam Mad3/BUB1 homology region 1 5 116 IPR013212 -
Trre8g02371 522 Pfam Protein kinase domain 220 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g02371 522 SUPERFAMILY Protein kinase-like (PK-like) 218 446 IPR011009 -
Trre8g02371 522 SMART serkin_6 219 498 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g02371 522 SMART mad3_bub1_i 1 116 IPR013212 -
Trre8g02371 522 Gene3D - 3 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02371 Trre-Chr8 19145963 19151615 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02371 226 409 MAP Kinase Kinase Gene Family AT1G32320 26.425 1.32e-06 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK BUB Trre8g02371 Pkinase 2.6e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02371 K02178 - gmx:100802272 833.943