Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02369 ATGAGTAGTGTACTTTGTGAAGAGCAACAAAAACTTCTCCTTTCCCTCAAAAAATCTCTCAATCTTAGAGACACCAATATGATAGACAACATCCCACCAAGAAAGCTACTCACCTGCCGACCACAACCCGCCACCACCGACATGTTTTCCGACGAGGATCCATATTCCTCCGACCATTTCCGAATGTATGAGTTCAAAATCCGGCGATGCACACGTAGCCGGAGTCACGACTGGACAGATTGCCCTTTCGCTCATCCGGGCGAAAAGGCACGCCGCCGTGACCCCCTTAGGTTTCAATACTCCGGTGAGGTGTGTCCTGATTACCGCCGCGGAAACTGCGAACGCGGCGATGCTTGTGAATTTTCCCATGGAGTTTTTGAGTGCTGGTTGCACCCTTCAAGGTATAGAACTGAAGCTTGTAAAGATGGAAAAAATTGTAAGAGAAAAATTTGTTTTTTTGCTCATACACCCCGTCAACTCAGAGTTTTGCTATTGCCACCCCCTCCTTCTCCTACACCTCAAAACAACAAAAATTGTTGTTCTTTTTGTCATTGCTGTTCAAATTCTTCATCTTCTTCATCACCCACTTCGATTTTGTTAAGTGGGCCACATTTTTCTTCTTCAAATTCACCACCTTTATCACCTTTGTCAAATTCAAATTCAAAGGATGTGCATGTTCTTAACGAGCTTATTCGATCTATGGAAAGTTTCAATTTTGGTGATGATATTCTTCATGAGGTTAATTCCCCTGTTTCTGCTTCAAAATTGAATTGGATTAATAATAATAATAATATTAGTCCTAATTCTTGTGGAAAATATTATTATTCAAATGGTAGTGACAACTTTTTGAGAGAAGAACAGAGGATTAAGGTTGTTGTTGAAGATGAAGTTGTTGCTAAACCAGATTTTGGGTGGGTGAATGATTTGCTGATGTAG 936 0.4103 MSSVLCEEQQKLLLSLKKSLNLRDTNMIDNIPPRKLLTCRPQPATTDMFSDEDPYSSDHFRMYEFKIRRCTRSRSHDWTDCPFAHPGEKARRRDPLRFQYSGEVCPDYRRGNCERGDACEFSHGVFECWLHPSRYRTEACKDGKNCKRKICFFAHTPRQLRVLLLPPPPSPTPQNNKNCCSFCHCCSNSSSSSSPTSILLSGPHFSSSNSPPLSPLSNSNSKDVHVLNELIRSMESFNFGDDILHEVNSPVSASKLNWINNNNNISPNSCGKYYYSNGSDNFLREEQRIKVVVEDEVVAKPDFGWVNDLLM 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02369 311 PANTHER UNKEMPT FAMILY MEMBER 47 310 IPR045234 -
Trre8g02369 311 SUPERFAMILY CCCH zinc finger 100 124 IPR036855 GO:0046872
Trre8g02369 311 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 103 124 IPR000571 GO:0046872
Trre8g02369 311 SMART c3hfinal6 134 157 IPR000571 GO:0046872
Trre8g02369 311 SMART c3hfinal6 99 125 IPR000571 GO:0046872
Trre8g02369 311 FunFam Zinc finger CCCH domain-containing protein 100 162 - -
Trre8g02369 311 Gene3D - 97 162 - -
Trre8g02369 311 ProSiteProfiles Zinc finger C3H1-type profile. 99 126 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02369 Trre-Chr8 19104427 19105362 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02369 51 260 C2H2 Transcription Factor Family AT5G07500 40.566 1.93e-52 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre8g02369 zf-CCCH 6.4e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02369 K23047 - psat:127100681 422.935