Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02368 ATGCGAAACTCATCTTCACCATCACAATCTCAATCTTCATCAATGGTTATGAAAACAAAGAATGTTAATCTTAAAATCAAAAAGCCTTTGAATAATAACAACAATGCAACAACAACTGAGATTCACTTCAGAGGCGTTAGAAAGAGACCATGGGGCCGTTACGCCGCCGAGATTCGTGATCCCGGCAAGAAAAGCCGCGTTTGGTTAGGCACCTTTGACACTGCCGAAGAAGCTGCCAGAGCTTACGATGCCGCCGCTCGTCAGTTCCGAGGCCCGAAAGCTAAGACCAATTTTCCTCCACCGTCTGATGTTGTTAAAGAGGATAGCCCAAGCCAGAGCAGCACCGTTGAGTCATCCACACCTGAGCGTGAAATCACGCGCCCTCGTGAAGTTGCTTCCGGCGGCGGCGGTGGAGGTGGAGGTGTCGGTGTCATGGATCGGTTTCCGTTTCTTTCGATCCAGCAACAAATCATGCCGTTTTCCGGCGCTGGTGTTGGTGTTGGTGGATTGAATGGAATGGTAACTGCTGTGAACCCGGTTTTCTTTTTTGATCCGGCGGCTCGAGCTGAGTTTATGAACCAAAGGTTTTCTACCCGGTTTGAACCGGGTCCGGTTGAGTTTAATATCGGGTTTGGTGGTGGTGGTGTCCAGAGCGACTCGGATTCGTCTTCTGTTGTTGATTGTCAGCCGAAGAGAGCTCTCAATCTTGATCTTAACTTAGCTCCACCAACGGATGTTTAA 741 0.4912 MRNSSSPSQSQSSSMVMKTKNVNLKIKKPLNNNNNATTTEIHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAARQFRGPKAKTNFPPPSDVVKEDSPSQSSTVESSTPEREITRPREVASGGGGGGGGVGVMDRFPFLSIQQQIMPFSGAGVGVGGLNGMVTAVNPVFFFDPAARAEFMNQRFSTRFEPGPVEFNIGFGGGGVQSDSDSSSVVDCQPKRALNLDLNLAPPTDV 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02368 246 Gene3D AP2/ERF domain 42 100 IPR036955 GO:0003700|GO:0006355
Trre8g02368 246 MobiDBLite consensus disorder prediction 90 139 - -
Trre8g02368 246 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 15 175 - -
Trre8g02368 246 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
Trre8g02368 246 SUPERFAMILY DNA-binding domain 42 99 IPR016177 GO:0003677
Trre8g02368 246 MobiDBLite consensus disorder prediction 106 121 - -
Trre8g02368 246 Pfam AP2 domain 42 91 IPR001471 GO:0003700|GO:0006355
Trre8g02368 246 CDD AP2 42 99 IPR001471 GO:0003700|GO:0006355
Trre8g02368 246 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Trre8g02368 246 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Trre8g02368 246 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Trre8g02368 246 MobiDBLite consensus disorder prediction 1 40 - -
Trre8g02368 246 FunFam Ethylene-responsive transcription factor 2 42 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02368 Trre-Chr8 19041646 19042386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02368 40 243 AP2-EREBP Transcription Factor Family AT5G44210 45.540 2.65e-48 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre8g02368 AP2 2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02368 K09286 - gmx:100801924 210.69