Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02357 ATGTTTGCGGTATCACCATTGAGGAACACTAAAGATGAAAACCAAGGAGAGATGGAGAGTTTTTCGATTACAACCGATGACTTCGGTGACCTTTCCGATGGAAATTTATTGGAAAGCATTAACTTCGACGACTTTTTTGTTGGCATCAACGTGGATGGAGACATTTTGCCCGATTTGGATATGGACTCAGAGATGTTTGCCGAGTTCTCTGCCAGTTATGGGGAGGAATCTGATATAAACTCATCCGCTATAAACAAAACAGATGAAAAGAATTATTCAAAAAACCAAGAAGACAAAACAATTTTTTCGCGTCGTCAAGGTTCGGAAGAGACGGTGAGCAAAAGGGATGAATCTGTAGTTGTGAATCCTCCATTGCAAAAAGATGGTGGTGGGAAAGGAAAAAAATCATCGAGTCAATCTAAAAACACTCAATGGAAGAAAAAAGTCAAGGTGGATTGGACACCAGAATTGCACAGGAGATTTGTGCAAGCTGTGGAACAGCTAGGGGTGGATAAAGCGGTGCCTTCAAGAATTTTGGAGCTTATGGGAATTGATTGTCTCACTCGCCATAACATTGCCAGCCATCTCCAGAAATATAGGTCACATAGAAAACATTTACTAGCACGTGAAGCAGAAGCAGCAAGTTGGAATCAAAGGAGACAAGTGTATGGTGGTGTAGGAGGAAAAAGAGAGGTAATGAGTCCATGGCCAACTGCTGCAGCAGCAGCACCAATCATGGGTTTCCCTCCTACTCCTACCCCTCCACCTCCCATGACTCCATTGCACCATCATTTTAGACCCTTGCATGTATGGGGGCATCCTTCAATGGACCAGTCTTTTATGCATACGTGGCATAAGCCGCCGCAGCCTCTCTCGTGGCCACCGGTGGCAGCTCCTCCGCCGCCTCAAGACCCTTCATTTTGGCATTCTCACCACCAACTGAGTCCAAACGCAATAATCCCACGAACACATTGTTTCTCACAACCTCTGACAACAGTGAGATCACTTGGATGTCCAATTCCCGGCGGCATACCACCCCATGGTATGTACAAAGCAGATCACGCCATTGCCTCTCCCGGACCCGCTCCCTTCGACTTCCATCCGTCAAAGGAGAGCATAGACGCAGTTATTGGAGATGTTTTATCAAAACCATGGTTGCCACTACCACTTGGACTCAAAGCTCCAGCAATTGATAGCGTAATGTGTGAACTACATAAACAAGGAGTTTCAGACATTCCACCCTCGTGTGCTTAG 1254 0.4577 MFAVSPLRNTKDENQGEMESFSITTDDFGDLSDGNLLESINFDDFFVGINVDGDILPDLDMDSEMFAEFSASYGEESDINSSAINKTDEKNYSKNQEDKTIFSRRQGSEETVSKRDESVVVNPPLQKDGGGKGKKSSSQSKNTQWKKKVKVDWTPELHRRFVQAVEQLGVDKAVPSRILELMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAASWNQRRQVYGGVGGKREVMSPWPTAAAAAPIMGFPPTPTPPPPMTPLHHHFRPLHVWGHPSMDQSFMHTWHKPPQPLSWPPVAAPPPPQDPSFWHSHHQLSPNAIIPRTHCFSQPLTTVRSLGCPIPGGIPPHGMYKADHAIASPGPAPFDFHPSKESIDAVIGDVLSKPWLPLPLGLKAPAIDSVMCELHKQGVSDIPPSCA 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02357 417 Pfam Myb-like DNA-binding domain 151 200 IPR001005 -
Trre8g02357 417 NCBIfam myb-like DNA-binding domain, SHAQKYF class 148 202 IPR006447 GO:0003677
Trre8g02357 417 MobiDBLite consensus disorder prediction 8 25 - -
Trre8g02357 417 SUPERFAMILY Homeodomain-like 146 205 IPR009057 -
Trre8g02357 417 FunFam Two-component response regulator 144 207 - -
Trre8g02357 417 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 146 204 IPR017930 -
Trre8g02357 417 MobiDBLite consensus disorder prediction 90 116 - -
Trre8g02357 417 Gene3D - 145 206 - -
Trre8g02357 417 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 416 IPR044825 GO:0003700|GO:0045893
Trre8g02357 417 MobiDBLite consensus disorder prediction 1 25 - -
Trre8g02357 417 MobiDBLite consensus disorder prediction 77 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02357 Trre-Chr8 18937218 18941822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02357 1 292 G2-like Transcription Factor Family AT5G44190 43.548 4.07e-61 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre8g02357 Myb_DNA-binding 1.7e-08 CL0123