Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02331 ATGGTGAACAAGAGAAATGTTAGAGAATGTGAAGGAGTGGTAAAAACCAGTGAAGAAAGGAACACGGAATGGAAACAGATAAGGGAAGAGGCGGCATCGGTAACAGCTGCTCTACTTAGAGTTCGAAGAGCAAGAAAACGTTACATTGGGGTGAGACAGAGACCTTCAGGAAGATGGGTGGCTGAGATCAAAGACACCATACAGAACATAAGACTATGGTTGGGGACTTACGACACTGGCGAAGAGGCTGCTAGAGCTTATGATGAAGCTGCACGTTTGCTTCGTGGTGCAAACACCCGCACAAATTTCTTTCTTTGCCAATCATCGTCTCATTATGTTCCTTCCCTTCCTCCAAAGATTGCCAAAACCTTGCTTCTAAGGCTCAAAGCAAGAAACATTGCCTCTTCTTGTATTCCTACTAGTACTACTACTTTTCCTACTAACCACTATGATGACCTAGAAAACAAAGCACAACCTCAACCCCATTTTTTTCACCAAATAGAAGAAAACTATATAGAAATTTATGATGGTACTAGTATTGGTTCTTCTGACATAACTACTATTGACTGTGGTAGTGGGACTAGTGAAGAAAATGTTAACCAAGAGGGTAGCAGAGAGGATTTTAGATTGGGATATCATTGTGCTAACAGTGTTGGTGATGGTGAAAACAACCAGATTGCGGAGTGTGATGTTGAATTTGAAAACAGTGATGCTGGAGTCATTGACTTCCAGTTTCTGGATACTGTTGGATCATTAAGTCACTTTTACTCTTCTTCTCCATTTGAGATAGCAGAGGAGATGGTGGGGCCAATGTCAGACGAGAAATATGACGTGGATGATTCACTGTTACTTAGAGAAACATTTAGAATGAAGTACGAACGCAAATTCTCAGCTTGTCTATACACCTTGATTGGGGTATCTGAGTGTTTGAGGCTACAAGTTGGACCAGAAAATGGAAATGATTTCTAA 969 0.4107 MVNKRNVRECEGVVKTSEERNTEWKQIREEAASVTAALLRVRRARKRYIGVRQRPSGRWVAEIKDTIQNIRLWLGTYDTGEEAARAYDEAARLLRGANTRTNFFLCQSSSHYVPSLPPKIAKTLLLRLKARNIASSCIPTSTTTFPTNHYDDLENKAQPQPHFFHQIEENYIEIYDGTSIGSSDITTIDCGSGTSEENVNQEGSREDFRLGYHCANSVGDGENNQIAECDVEFENSDAGVIDFQFLDTVGSLSHFYSSSPFEIAEEMVGPMSDEKYDVDDSLLLRETFRMKYERKFSACLYTLIGVSECLRLQVGPENGNDF 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02331 322 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Trre8g02331 322 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Trre8g02331 322 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Trre8g02331 322 SUPERFAMILY DNA-binding domain 47 104 IPR016177 GO:0003677
Trre8g02331 322 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 30 206 - -
Trre8g02331 322 Pfam AP2 domain 47 96 IPR001471 GO:0003700|GO:0006355
Trre8g02331 322 Gene3D AP2/ERF domain 46 105 IPR036955 GO:0003700|GO:0006355
Trre8g02331 322 FunFam ethylene-responsive transcription factor RAP2-11 46 105 - -
Trre8g02331 322 CDD AP2 46 103 IPR001471 GO:0003700|GO:0006355
Trre8g02331 322 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02331 Trre-Chr8 18756779 18757747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02331 45 103 AP2-EREBP Transcription Factor Family AT5G19790 76.271 5.28e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre8g02331 AP2 6.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02331 K09286 - gmx:100793940 368.622