Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02324 ATGGCTACTATCTTTTCTGGAGGTTCAGTCTCTCCCTTTCTTTTTCACAGACCCAAAAGTCCAATTCTTCAGCTGAAGAGACCTATCTCTGCAAAATCAGTAGCTTCTGTAGGAACTGATACATCACTGTCTCCAGCAGTTCAAACCTTCTGGAAGTGGCTTCAAGAAGAAGGTGTTATCACTGCAAAGACACCTGTGAAAGCTAGTGTGGTTCCAGAAGGTCTAGGATTGGTTGCACTCAAAGACATTTCTAGGAATGATGTTGTTTTGCAGGTACCAAAAAGGCTGTGGATAAATCCAGATGCAGTTGAAGCTTCAGAGATTGGGAGAGTATGCAGTGAGTTGAAGCCATGGTTATCTGTTATACTCTTTCTCATTAGAGAGAGGTCAAGGAGTGATTCTATTTGGAAGCACTACTTTGGTATTCTGCCACAGGAAACTGATTCTACTATATATTGGTCAGAGGAAGAGCTCCAAGAAATTCAAGGTACTCAACTTCTGAACACAACCCTATCTGTGAAAGAATATGTGAAGAATGAATGTCTTAAACTGGAAAAAGAAATCATTCTCCCTAATAAGCGGCTTTTTCCTTCTCCTGTAACACTGGATGACTTCTTCTGGGCATTTGGGATTCTCAGATCAAGGGCATTTTCTCGCCTTCGCAATGAAAATCTAGTTATAATTCCACTGGCAGACTTGCTTAACCACAGTGCAAGGGTAACTACAGCAGATCATGCTTATGAAGTTAAAGGAGCAGCTGGTCTTTTCTCTTGGGATTACCTGTTTTCCGTAAGGAGCCCCCTTTCTGTCAAAGCTGGAGAACAGGTATATATCCAATATGATTTAAACAAAAGCAATGCAGAGTTGGCTTTGGACTACGGTTTCATTGAACCAAATGCAGATCGACATGCATACACCCTAACACTAGATATATCTGAGTCAGACCCTTTTTTTGATGACAAACTAGACATTGCCGAGTCCAATGGTTTCGCTCAGACAGCATACTTTGATATCTTCTACAACCGTCCCCTTCCACCAGGGATGATTACATATCTGAGACTAGTAGCGCTAGGTGGTACCGATGCTTTCTTATTGGAATCGTTGTTCAGAGACTCCATATGGGGTCATCTTGAGTTGCCAGTGAGCCGTGACAATGAGGAGCTATTGTGCAAAGCGGTTCGAGATGCCTGCAAATCCGCCCTTGCTGGTTATCATACAACCATTGAACAGGATCGCAAGTTGAAAGAAGAAAATCTAGATTACAGGCTTGCAATAGCAGTTGGAGTAAGAGAAGGAGAAAAGATGGTCCTGCAGCAAATTGATGAGACCTTCGAGCAGAAAGAATCGGAACTAGACCAGTTGGAATATTATCAAGAAAGGAGGCTCAAGGATCTTGGGCTTTGCGGTGAAACTGGTGATGTCCTTGGCGACCTTGGAAAATTCTTCTAA 1449 0.4258 MATIFSGGSVSPFLFHRPKSPILQLKRPISAKSVASVGTDTSLSPAVQTFWKWLQEEGVITAKTPVKASVVPEGLGLVALKDISRNDVVLQVPKRLWINPDAVEASEIGRVCSELKPWLSVILFLIRERSRSDSIWKHYFGILPQETDSTIYWSEEELQEIQGTQLLNTTLSVKEYVKNECLKLEKEIILPNKRLFPSPVTLDDFFWAFGILRSRAFSRLRNENLVIIPLADLLNHSARVTTADHAYEVKGAAGLFSWDYLFSVRSPLSVKAGEQVYIQYDLNKSNAELALDYGFIEPNADRHAYTLTLDISESDPFFDDKLDIAESNGFAQTAYFDIFYNRPLPPGMITYLRLVALGGTDAFLLESLFRDSIWGHLELPVSRDNEELLCKAVRDACKSALAGYHTTIEQDRKLKEENLDYRLAIAVGVREGEKMVLQQIDETFEQKESELDQLEYYQERRLKDLGLCGETGDVLGDLGKFF 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02324 482 SMART set_7 64 287 IPR001214 GO:0005515
Trre8g02324 482 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 304 475 IPR036464 -
Trre8g02324 482 SUPERFAMILY SET domain 43 302 IPR046341 -
Trre8g02324 482 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 297 461 - -
Trre8g02324 482 PIRSF RMT_SET 1 481 IPR011192 GO:0009507|GO:0030785
Trre8g02324 482 Gene3D - 297 461 IPR036464 -
Trre8g02324 482 Pfam SET domain 74 280 IPR001214 GO:0005515
Trre8g02324 482 Gene3D set domain protein methyltransferase, domain 1 43 296 - -
Trre8g02324 482 CDD SET_RBCMT 58 296 IPR044431 GO:0016279|GO:0018022
Trre8g02324 482 ProSiteProfiles SET domain profile. 57 281 IPR001214 GO:0005515
Trre8g02324 482 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 43 295 - -
Trre8g02324 482 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 44 423 - -
Trre8g02324 482 Pfam Rubisco LSMT substrate-binding 313 437 IPR015353 -
Trre8g02324 482 ProSiteProfiles Plant LSMT protein-lysine methyltransferase family profile. 15 480 IPR011192 GO:0009507|GO:0030785
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02324 Trre-Chr8 18707304 18710303 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02324 44 236 NAC Transcription Factor Family AT3G56570 29.703 7.23e-10 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre8g02324 SET 4.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02324 K00592 - ag:AAA69903 879.396