Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02320 ATGGCAACAACAGAAGAAGAACAAGAAGATTACATGCAACAACTCAGATCCAAAGCAACAGAACTTTTCATAAGAGAAGAATGGAACGATTCAATCCAAGCATATTCCCATTTCATCACTCTCTGCACTCACCATCTCTCTCTTCCTCACTCAGACCCACAAAAACTTCGCAAATCTCTCTGCATAGCTCTCTGTAATCGCGCCGAAGCAAAATCGAGATTACGTGATTTCAACTCTGCATTACAAGATTGTGATCATGCTTTGCAACTTGATGCTACCCATTTCAAAACCCTAGTTTGCAAAGGTAAGATTTTGCTTTCTCTTAATAGATACTCAATGGCTCTTCATTGCTTTAAAATAGCTCTGCTTGATCCTCAAGCTAGTGGGAACTCTGAATTTCTTGTTGGGTATTTTGAAAAATGTAAAAAGTTTGAATTTTTATCAAGAACTGGGAATTTGGATCTTTCTGATTGGGTTTTGAATGGGTTTCCTGGTAAGGCTCCTGAACTTGCTGAGTATATTGGTGCTGTTGAGATTAGAAAATCGGAAATTAGTGGGCGTGGTGTTTTCGCTACGAAGAATATTGATGCAGGGTCTTTGATTTTAGTTACTAAGGCAATTGCAATGGAGAGGAGTATATTGGTAGGTAAAGATTTGAGTGAGGATACACAATTAGTTATGTGGAAGAATTTTATTGATAAAGTTGTTGATTTTGTTAGAAAATGTCATAAGACTAGGGATTTGATTGGTAAATTGTCAATTGGGGAAAATGAGGATGAACTTGATGTGCCTGATGTAGATCTCTTTAGGCCTGAGAGTATTGGTGAAGTGAATTCAAGTGAGGATATTGATATTGATATGGTTAAGTTATTGGCTATATTGGATGTTAATTCTCTCACTGAGGATTCGGTTTCGGCCAATGTTTTGAGGAAGAATAATGATTGTTATGGTGTTGGGTTATGGTTGCTTCCTTCATTCATCAATCACTCATGTTGTCCTAATGCGAGGCGATTGCATGTTGGGGATTATTTGATTGTTCATGCTTCAAGAGATTTGAAAGCCGGTGAAGAGATAACTTTGGCCTATCTTGATCCACTTACTCCCTTGAACAAGAGAAAAGAGATGTCTATGACATGGGGGATTCATTGTAAGTGTAAGAGGTGCAAGTTTGAAGGGGAAATCTTGTCCTCCAAGCAAGAGATGAAGGAGATTGAGATTGGTATTGAAAGAGGGATGGATGTGGGTGGTTTGGTGTATAAACTTGAGGAACAAATGAAGAGATGGAAGGTTAGGGGGAAAGAGAAGGGATACTTGAGGGCTTCATTTTGGTCTTTATATTCGGAGGCTTACGGTTCGGAGAGGTGTATGAAAAGATGGGGAAGGAGGATTCCAGCATTGGATGCAGTGGTTGATAGTATCACAGATGTAGTTGGAGGTGATCACAGGGTGCTCAAGATTTTGATGGAGGAATTGAAGAAAAAAGGCGGTGGTAGTGGTGGTGGAAATTTAGAGATGGAGAAAGTTTTCAAGTTAGCAAGAGAAGTGTATGGAAAGGTAGTGAAAAAGCAAGCAATGAGGACACTGCTTGAGCTTTGCATTGCTGATTGA 1608 0.3937 MATTEEEQEDYMQQLRSKATELFIREEWNDSIQAYSHFITLCTHHLSLPHSDPQKLRKSLCIALCNRAEAKSRLRDFNSALQDCDHALQLDATHFKTLVCKGKILLSLNRYSMALHCFKIALLDPQASGNSEFLVGYFEKCKKFEFLSRTGNLDLSDWVLNGFPGKAPELAEYIGAVEIRKSEISGRGVFATKNIDAGSLILVTKAIAMERSILVGKDLSEDTQLVMWKNFIDKVVDFVRKCHKTRDLIGKLSIGENEDELDVPDVDLFRPESIGEVNSSEDIDIDMVKLLAILDVNSLTEDSVSANVLRKNNDCYGVGLWLLPSFINHSCCPNARRLHVGDYLIVHASRDLKAGEEITLAYLDPLTPLNKRKEMSMTWGIHCKCKRCKFEGEILSSKQEMKEIEIGIERGMDVGGLVYKLEEQMKRWKVRGKEKGYLRASFWSLYSEAYGSERCMKRWGRRIPALDAVVDSITDVVGGDHRVLKILMEELKKKGGGSGGGNLEMEKVFKLAREVYGKVVKKQAMRTLLELCIAD 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02320 535 Gene3D SET domain 280 392 IPR046341 -
Trre8g02320 535 SMART tpr_5 12 45 IPR019734 GO:0005515
Trre8g02320 535 SMART tpr_5 95 127 IPR019734 GO:0005515
Trre8g02320 535 SMART tpr_5 61 94 IPR019734 GO:0005515
Trre8g02320 535 SUPERFAMILY SET domain 176 389 IPR046341 -
Trre8g02320 535 Coils Coil 534 535 - -
Trre8g02320 535 ProSiteProfiles SET domain profile. 175 363 IPR001214 GO:0005515
Trre8g02320 535 Gene3D SET domain 175 261 IPR046341 -
Trre8g02320 535 Gene3D Tetratricopeptide repeat domain 5 142 IPR011990 GO:0005515
Trre8g02320 535 PANTHER TPR DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_5G12710) 2 530 - -
Trre8g02320 535 CDD SET_SMYD 291 388 - -
Trre8g02320 535 SUPERFAMILY TPR-like 7 122 IPR011990 GO:0005515
Trre8g02320 535 Pfam SET domain 186 362 IPR001214 GO:0005515
Trre8g02320 535 SMART set_7 175 369 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02320 Trre-Chr8 18652968 18654575 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre8g02320 SET 8.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02320 - - mtr:11446296 948.732