Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02310 ATGAAAGCATGGCCAGCAATGCAATCTTCTTCTTCTACTAGTTATTCTTCTCCTTCAATGGGAATGGTCTATACAAACATGGACTCTCTATCACTTAACTATGCTGCTGCTTCTTCTTCTTCATCTCAAGATTTCTATGTCTCAAAGGAAGGTACTAATAACACTACTACTGCTAAATGGTCTTTACCATTTATGAGTGAATGTTGTATTGCAAGAAACTTTGAGGAAAACCAAAACAGTGATGATGTTGGAGAAGGTAATAATGGTTCTGATTCTGGTGGAGAAAACAACAGTGACAAAATTAACCCTAATGACAATAATTATGTCAGTGGCAAAGAGGTAATTGATACTGGACATTCTAAACTATGTGCTAGAGGTCATTGGAGACCTGCAGAAGATTCTAAGCTTAAAGAACTTGTTGCTCTTTATGGTCCTCAGAACTGGAATCTCATAGCTGAAAAGCTAGAAGGAAGATCAGGTAAGAGTTGTAGACTTAGATGGTTCAACCAATTGGATCCAAGGATTAATAGAAGAGCTTTTAGTGAAGAAGAAGAAGAAAGACTAATGCAAGCTCATAGGATTTATGGAAACAAATGGGCCATGATAGCTAGACTTTTTCCTGGAAGAACTGATAATGCTGTTAAGAATCACTGGCATGTTATAATGGCTAGAAAGTACAGAGAACAATCCAGTGCTTACAGAAGAAGGAGACTGAATCAATCTGTTTACAGAAGAATAGAAGATAATGCAATAACCTCAGGGATGATTGAACCAATACCATCACCCTATTGTATTAACATTAATCTCCCAAATGGTTATAACAACATGAATAATACTTTTCCATTTTCATCTTTCCATGGAGGAGTAATTGATGGTGGTGTTGATTGTGGCTTAAATGGTTCACCTCATTTGTCTGCTAGCAAAGAAGCAATCTCAAGTAACAAACAAACCCCTAGCGGACCTTTTGGCTTGTTTTCTCAACAATCACCACTTGATTTCATTTCTGGAGGTATAAGAAATGATCATTATAACCAAATGAAAAGCTGGGATAGGCCAAGTGATTTACACAATCAACCAAGTGGTTTTTACCATCAATATATGATGCAAATGCAACAACAAAACAACAATTTTTACAGTTTCACATCAAATTCAACCACAGCAGCAGCAACATCAACAACACAGATATTAGGTAGTGAAGTTTCACTATCATCAGTTGTAGCAGTAGAAGATCACAGAGATGAAGTTATGATGAGTAATTCCAATACCTCTCCTTCAGATGCAATTCCATTTATTGATTTCCTTGGAGTAGGAGCCACAGCAACAACATGA 1329 0.3672 MKAWPAMQSSSSTSYSSPSMGMVYTNMDSLSLNYAAASSSSSQDFYVSKEGTNNTTTAKWSLPFMSECCIARNFEENQNSDDVGEGNNGSDSGGENNSDKINPNDNNYVSGKEVIDTGHSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRLNQSVYRRIEDNAITSGMIEPIPSPYCININLPNGYNNMNNTFPFSSFHGGVIDGGVDCGLNGSPHLSASKEAISSNKQTPSGPFGLFSQQSPLDFISGGIRNDHYNQMKSWDRPSDLHNQPSGFYHQYMMQMQQQNNNFYSFTSNSTTAAATSTTQILGSEVSLSSVVAVEDHRDEVMMSNSNTSPSDAIPFIDFLGVGATATT 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02310 442 FunFam MYB transcription factor 125 176 - -
Trre8g02310 442 Pfam Myb-like DNA-binding domain 177 220 IPR001005 -
Trre8g02310 442 Pfam Myb-like DNA-binding domain 125 171 IPR001005 -
Trre8g02310 442 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 125 171 IPR017930 -
Trre8g02310 442 PANTHER MYB PROTEIN-RELATED 112 321 - -
Trre8g02310 442 SUPERFAMILY Homeodomain-like 125 218 IPR009057 -
Trre8g02310 442 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 172 226 IPR017930 -
Trre8g02310 442 CDD SANT 128 169 IPR001005 -
Trre8g02310 442 Gene3D - 178 247 - -
Trre8g02310 442 MobiDBLite consensus disorder prediction 76 111 - -
Trre8g02310 442 SMART sant 176 224 IPR001005 -
Trre8g02310 442 SMART sant 124 173 IPR001005 -
Trre8g02310 442 CDD SANT 179 219 IPR001005 -
Trre8g02310 442 ProSiteProfiles Myb-like domain profile. 125 171 IPR001005 -
Trre8g02310 442 Gene3D - 125 176 - -
Trre8g02310 442 ProSiteProfiles Myb-like domain profile. 172 222 IPR001005 -
Trre8g02310 442 FunFam MYB transcription factor 178 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02310 Trre-Chr8 18508907 18510728 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02310 99 249 MYB Transcription Factor Family AT1G69560 72.785 1.80e-76 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre8g02310 Myb_DNA-binding 2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02310 K09422 - gmx:100804537 394.045