Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02304 ATGGATCAGCAAAACCAAAGTATGCGTTTGGTTCTTTCTACTGATGCTAAGCCTAGGCTTAAATGGACTCATGAACTTCACCAAAGATTTTCTGAGGCAATTAATCAGCTTGGAGGTGCAGAAAAGGCAACACCAAAGAGTCTTATGAGGGTGATGGGGATTCCAGGACTCACTTTATACCATCTCAAGAGCCACTTACAGAAATATAGACTTGGCAAAAGCCAACAGGTAGAAACATGTTCTGACAACAAACAAGATTATATAGAAATCCAAAGCACTGGTAGTAGTCAATGCAGCAAAGAAATCGGTGTTGGAAACCAGAATCAAACGGCCGAAAGCTTCAAGATTTCTGAGGCACTCCAAATACAAATGGAAGTACAAAAGAAACTTTATGAACAAATTGAGGTGCAGAAACATTTACAGTTTAGAATAGAAGCTCAAGGAAAGTACTTACAATCGGTACTAATGAAGGCGCAAGAAGCACTTGGAGGACACGGTTCTTCTTCGACAACTGGTGTAGAACATGCTAAAGATGAACTTTCTCAGTTATTATCAATAATCAACAATGCATGTCCTAGTTCTCCCATTTCAGAACTAACAGAAACAAGAGGTTTAAGTTTAAACTTTGGTGAGACGAAACAAAATAGAGGAACTATGTGTTCTCTAGAAAGTTCTCTTACATCATCTGAAAGCTCTGAGAGAAAAGAGGAAAATCAAACCATAAATGAGGCAGAGAATACTCCAAATTATAATAGTATTGCAGTTGAATTGCCATTAGTTTCCATTGAAACAGAAAGTAAAACATTCAGGACTGATACAAAAAATGATGAAGCTAGTGGGAAAAAGAGAAGTGCAAGTACTGATTTTGATGGTGGCTGTGACGATCAATCAGATGGAAAAAGATGTGGCAAAAAATTGAGGAAATCTCAGTTGTCACAAATGCTTGACTTGAACAAAAAATATGAGAGAGACATTGACTTAAGTTCCTCAGAAATAGATTTAAATTGTAGTTCAAGCTTTTAA 1023 0.3695 MDQQNQSMRLVLSTDAKPRLKWTHELHQRFSEAINQLGGAEKATPKSLMRVMGIPGLTLYHLKSHLQKYRLGKSQQVETCSDNKQDYIEIQSTGSSQCSKEIGVGNQNQTAESFKISEALQIQMEVQKKLYEQIEVQKHLQFRIEAQGKYLQSVLMKAQEALGGHGSSSTTGVEHAKDELSQLLSIINNACPSSPISELTETRGLSLNFGETKQNRGTMCSLESSLTSSESSERKEENQTINEAENTPNYNSIAVELPLVSIETESKTFRTDTKNDEASGKKRSASTDFDGGCDDQSDGKRCGKKLRKSQLSQMLDLNKKYERDIDLSSSEIDLNCSSSF 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02304 340 Gene3D - 16 74 - -
Trre8g02304 340 NCBIfam myb-like DNA-binding domain, SHAQKYF class 17 72 IPR006447 GO:0003677
Trre8g02304 340 SUPERFAMILY Homeodomain-like 16 72 IPR009057 -
Trre8g02304 340 MobiDBLite consensus disorder prediction 267 305 - -
Trre8g02304 340 MobiDBLite consensus disorder prediction 218 252 - -
Trre8g02304 340 Pfam Myb-like DNA-binding domain 19 70 IPR001005 -
Trre8g02304 340 Pfam MYB-CC type transfactor, LHEQLE motif 115 160 IPR025756 -
Trre8g02304 340 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 269 IPR044848 GO:0003700
Trre8g02304 340 FunFam Myb family transcription factor 16 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02304 Trre-Chr8 18422941 18424424 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02304 1 290 G2-like Transcription Factor Family AT1G69580 47.712 9.04e-78 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre8g02304 Myb_DNA-binding 6.9e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02304 - - gmx:100805252 433.721