Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02298 ATGAAAATTCTTTCTTTCATTATTATTATGGTGATTGCTTACAAAATTGCACCTACTATAGCAACAAATTCCATTAGTGTGTCTGAGTCTTTAAGTGATGGAACAACCTTAGTTTCAAAAGGTGGACAATTTGAACTGGGTTTCTTCAGCCCTGGCAATTCTACAAGACATTACCTTGGGATTTGGTACAAGCAGATGCCTATAAAGAAAGTTGTTTGGGTTGCAAATAGAGCCAACCCCATCAACAATACCTTAGGCATCTTAACACTGAGCACCACAGGCCATCTCATAAATGGTTTGGAACGGAGAATCACTTCTTGGAAGAGTCCTGATGATCCATCTCCAGGTGATCTTTCTTGGGGTCTTGTTCTTCATAACTATCCAGAATTTTATCTGATGAACGGAACACAGAAATACTGTCGGATTGGACCATGGAATGGACTTCAATTTAGTGGCCTGTCGGATAGAAAACAAAATCCTGTATATGATTTCAAGTATGTTGCTAATAATGATTTGAATTATGCGTCTAATAAGGATGAGATGTTTTACTCCTTTACCCTCAAGAATTCCTCTGCCTTCGTCAGTGCTACGTTAATGCAAGGATGGGCCGCAAACGACTGGAGTGGAGGGTGTGTCCGTAATATATCATTAAGATGCAACGACTCACAAACTGAGGATGTGTTGTTCAAATATAGGGGCTTCAAAGTACCAGATACTACACAAACTATGTTGTATGAGAATATTGATTTAGAGTTATGCAGAACCATGTGCTTGAATGACTGTTCTTGTACAGCTTTCACTAATTCAAACATAAGTGGAGGGGGTACTGGCTGTGTGATGTGGTTTGGTGATCTAATCGACATAAGACAGTTCGACACTGGTGGCCAAAATCTCTATATCCGTATAGCTCGGGTAGTAATAAAGGCTTCAAACGGGCGCAACAAAAGCATGATGACCATAGCTACTACCACTGCTGCTGCATTATCCGGGATGCTTTTATTTTGCATTTATGTCATATATAGAGTCCGAAGGAGAAATTATGATAAGTCAAAGGCCGACAATAACGTTGAAAAACATCTAGAAGATCTAGATATACCTTTGTTTGATCTGCAAACAATTACTAGTGCCACTAACAACTTCTCGTTGAATAGTAAGATTGGACAAGGTGGTTTTGGATCTGTATACAAGGGAAAGTTAGCGGATGGGCAAGAAATTGCTGTTAAGAGACATTCCACTAACTCTGGACAAGGAATTACCGAGTTCCTAACAGAAGTAAAACTGATTGCAAAACTTCAACACCGAAATCTTGTTAAGCTTCTTGGCTGTTGTGTTGGACGACAAGAAAAATTGCTAGTATATGAATACATGGCTAACGGTAGCCTTGACTCCTTTATCTTTGATAAAGTAAATGGTAAATTGTTGGACTGGCCCCAACGCTTCCAAATAATATTTGGAATTGCTAGGGGACTTGTGTATCTTCATCAAGATTCTCGATTAAGGATTATTCATAGAGATCTCAAAGCAAGTAATGTATTGTTGGATGACAAGTTGAACCCAAAAATATCAGATTTTGGAATGGCTAGATCTTTTGGTGGTGATCAGATTGAAGGAAATACAAATAGAGTAGTTGGAACATATGGATACATGGCACCAGAGTATGCGGTCGATGGGAAATTTTCAATCAAATCAGACGTTTTCAGCTTTGGTGTTTTACTATTGGAGATTATATGTGGGAACAAAAATAGAGCACTTTGTCATGGAAACGAGACACTTAACCTTGTTGGTTATGCATGGACACTTTAG 1803 0.3877 MKILSFIIIMVIAYKIAPTIATNSISVSESLSDGTTLVSKGGQFELGFFSPGNSTRHYLGIWYKQMPIKKVVWVANRANPINNTLGILTLSTTGHLINGLERRITSWKSPDDPSPGDLSWGLVLHNYPEFYLMNGTQKYCRIGPWNGLQFSGLSDRKQNPVYDFKYVANNDLNYASNKDEMFYSFTLKNSSAFVSATLMQGWAANDWSGGCVRNISLRCNDSQTEDVLFKYRGFKVPDTTQTMLYENIDLELCRTMCLNDCSCTAFTNSNISGGGTGCVMWFGDLIDIRQFDTGGQNLYIRIARVVIKASNGRNKSMMTIATTTAAALSGMLLFCIYVIYRVRRRNYDKSKADNNVEKHLEDLDIPLFDLQTITSATNNFSLNSKIGQGGFGSVYKGKLADGQEIAVKRHSTNSGQGITEFLTEVKLIAKLQHRNLVKLLGCCVGRQEKLLVYEYMANGSLDSFIFDKVNGKLLDWPQRFQIIFGIARGLVYLHQDSRLRIIHRDLKASNVLLDDKLNPKISDFGMARSFGGDQIEGNTNRVVGTYGYMAPEYAVDGKFSIKSDVFSFGVLLLEIICGNKNRALCHGNETLNLVGYAWTL 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02298 600 SMART ntp_6 223 302 IPR003609 -
Trre8g02298 600 ProSitePatterns Protein kinases ATP-binding region signature. 386 408 IPR017441 GO:0005524
Trre8g02298 600 Gene3D Phosphorylase Kinase; domain 1 341 455 - -
Trre8g02298 600 Pfam PAN-like domain 219 288 IPR003609 -
Trre8g02298 600 Pfam Protein tyrosine and serine/threonine kinase 381 583 IPR001245 GO:0004672|GO:0006468
Trre8g02298 600 Gene3D Transferase(Phosphotransferase) domain 1 456 600 - -
Trre8g02298 600 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 343 455 - -
Trre8g02298 600 ProSiteProfiles Bulb-type lectin domain profile. 22 145 IPR001480 -
Trre8g02298 600 ProSiteProfiles PAN/Apple domain profile. 219 303 IPR003609 -
Trre8g02298 600 FunFam Lectin-domain containing receptor kinase A4.3 456 600 - -
Trre8g02298 600 ProSiteProfiles Protein kinase domain profile. 380 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g02298 600 Gene3D - 18 141 IPR036426 -
Trre8g02298 600 SMART serkin_6 380 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g02298 600 ProSitePatterns Serine/Threonine protein kinases active-site signature. 501 513 IPR008271 GO:0004672|GO:0006468
Trre8g02298 600 SUPERFAMILY alpha-D-mannose-specific plant lectins 70 147 IPR036426 -
Trre8g02298 600 SUPERFAMILY Protein kinase-like (PK-like) 362 588 IPR011009 -
Trre8g02298 600 CDD STKc_IRAK 386 578 - -
Trre8g02298 600 CDD B_lectin 28 97 IPR001480 -
Trre8g02298 600 CDD PAN_AP_plant 217 303 - -
Trre8g02298 600 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 6 96 - -
Trre8g02298 600 SMART blect_4 28 139 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02298 Trre-Chr8 18397200 18401363 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02298 318 600 Receptor kinase-like Gene Family AT4G23190 52.613 3.38e-99 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre8g02298 PK_Tyr_Ser-Thr 2.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02298 - - gmx:100812007 721.465