Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02297 ATGAATTTCATTCATAATATTCTATTTATTCTTTCTCCTATAGTTTCCAATTCCATAGCCAGTGATAACACATCATCCATTATTACTCAATCTCAATCCATCAGTGATGGAGAGATCATTGTTTCACCAAATAGATTATTTGAGTTCGGTTTATTTAGTATTAAAAATCCTAACAAACGTTACCTCGGTATTCGATTCAAGAATATTCCAACTCAAAATGCTGTTTGGGTTGCAAATGGTGGCAAGCCAATCAATGACTCTTCTGCAGTATTGAAACTAAATAGTTCTGGCAGTTTGGTCCTTACACACAACAACAATGTTGTCTGGTTCACAAATTCTTCCACAAAAGCACAGAAACCAGTTGCACAACTCTTGGATAATGGTAATCTAGTCATAAAAGAAGATAGTGTTAGTGAAACCTATCTGTGGCAAAGCTTCGACTACCCATCTAATACATTGTTGGCAGATATGAAGTTGGGATGGGACCGTAAGAGAAATTTGAATAGGCGTCTTAAAGCATGGAAGAGTGACGATGATCCAACACCTGGAGAATTTACTTGGGGTGTGGCATTGAATCCGTATCCGGATATCTATATGATGAAGGGAGAAAAAAAGTACCACAGACTTGGACCATGGAACGGATTGCGTTTTAGCGGTATGCCAGAGATGAAGCCTAATCCTGTTTTCAGCTACAAGTTTGTTTCCAACAAAGAAGAAGTTTATTACTCATGGAGCACCAATGATATATCTCTAATATCAAAAGTGGCACTTAACCAAACAAGTTACCAACGTCCACGCTATGTATGGTCAAAAGCCGATAAATCATGGATGCTTCATTCAAGAATGCCAGGAGACTATTGTGACCGTTATGGTCTATGTGGAGTTAATGGATATTGCAGCAGTACTAATTCACCAATATGCGAATGTTTAAAAGGGTTCAAGCCTAATTTTCCTGAAAAATGGAAGTCAATGGACTGGTCTCAAGGATGTGTTAGAAATCACAAATTGAACTGCATCAATGAAGGGTTTGTCTCAGTGGAAAACTTGAAAATTCCAGATACTACAAATACTTCGGTGGATGAGAGTATTGGTCTAGAACAATGCAGAAACAAATGCTTGAAAAGTTGTTCATGTATGGCCTATACAAATACAAATATAAGTGGAGCAGGAAGTGGTTGTGTTATGTGGTTTGGTGATTTAATTGATATCAAACTTTTTCCAGCTGGTGGACAAGTTCTATATATCAGGATGCCTGCTTCAGAATTAGACGAAGTCAACGAGCAAAAGTGGAAATTGAGAAAAGTCGTTGTAATTGCTGTTTCTGCAGCTTCGGGAATGTTTTTACTTGCGATGTATTTTTTCTACAGATTCCGGAGGAGCATTGTTGGGAAGTCAAACACTGAAGATGACTATGAAAGACACGAGAACGATATGGATCTCCCCTTACTAAATTTGTCAAAAATTATTATTGCCACTGACAACTTCTCAGAGAAGAACAAAATCGGAGAAGGTGGTTTTGGACCTGTCTATTTGGGAAAATTAGGGAGCGGGCTAGAAATTGCTGTCAAGAGACTTTCACAGAGCTCAAAACAAGGGATGAGAGAATTCATAAATGAAGTAAAACTTATTGCAAATGTTCAGCACCGAAATCTTGTAAAGCTTATTGGTTGTTGCATTCAGAGACACGAAAAGTTGCTAGTTTATGAATACATGTCTAATGGTAGCCTAGATTACTTCATTTTTGATCGTACCAAAAGTCAAATGCTAGATTGGCCAAAGCGCTTCCACATAATTTGTGGAATCGCTAGAGGGCTTATGTATCTCCATCAAGATTCTCGATTGAGGATTGTTCATAGAGATCTAAAAACAAGTAATGTTTTACTAGATGATACTTTGAATCCCAAAATATCGGATTTTGGAATGGCTAGAACTTTTGGAGGAAACCAAATTGAAGGAAACACAAATAGAATTGTTGGGACATATGGGTACATGGCACCAGAGTATGCTATTGACGGACAATTTTCCGTGAAATCTGATGTTTTTAGCTTTGGTATTTTGATATTAGAGATTATATGTGGGAAGAAAAACCGAGTGCGTTATCGTGCAAAGAAAACTCTTAACCTTGTTGCTTATGCATGGACATTCTGGAAACATGAAAGAGCTTTACAAATAATTGACTCAAACATAGAGGAAACGAGCATCGAATCTGAAGTATCACGTTGTATACACGTTGCACTCTTATGCGTGCAACAATACCCAGAGGATAGGCCTACCATGGCTGATGTGATTCTAATGTTAGGGAGTGAGATGGCATTGGATGAGCCTAAGGAGCCAGGTTTTATTACAAGAAGGGAATCTGTTGAAGCAAATTCAAGCTCAAGTGGGAAGGATACAAGTTCAAACTATGAATTGACCATAACCTCTTTAAGTGTTCGATGA 2439 0.3788 MNFIHNILFILSPIVSNSIASDNTSSIITQSQSISDGEIIVSPNRLFEFGLFSIKNPNKRYLGIRFKNIPTQNAVWVANGGKPINDSSAVLKLNSSGSLVLTHNNNVVWFTNSSTKAQKPVAQLLDNGNLVIKEDSVSETYLWQSFDYPSNTLLADMKLGWDRKRNLNRRLKAWKSDDDPTPGEFTWGVALNPYPDIYMMKGEKKYHRLGPWNGLRFSGMPEMKPNPVFSYKFVSNKEEVYYSWSTNDISLISKVALNQTSYQRPRYVWSKADKSWMLHSRMPGDYCDRYGLCGVNGYCSSTNSPICECLKGFKPNFPEKWKSMDWSQGCVRNHKLNCINEGFVSVENLKIPDTTNTSVDESIGLEQCRNKCLKSCSCMAYTNTNISGAGSGCVMWFGDLIDIKLFPAGGQVLYIRMPASELDEVNEQKWKLRKVVVIAVSAASGMFLLAMYFFYRFRRSIVGKSNTEDDYERHENDMDLPLLNLSKIIIATDNFSEKNKIGEGGFGPVYLGKLGSGLEIAVKRLSQSSKQGMREFINEVKLIANVQHRNLVKLIGCCIQRHEKLLVYEYMSNGSLDYFIFDRTKSQMLDWPKRFHIICGIARGLMYLHQDSRLRIVHRDLKTSNVLLDDTLNPKISDFGMARTFGGNQIEGNTNRIVGTYGYMAPEYAIDGQFSVKSDVFSFGILILEIICGKKNRVRYRAKKTLNLVAYAWTFWKHERALQIIDSNIEETSIESEVSRCIHVALLCVQQYPEDRPTMADVILMLGSEMALDEPKEPGFITRRESVEANSSSSGKDTSSNYELTITSLSVR 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02297 812 ProSiteProfiles PAN/Apple domain profile. 338 419 IPR003609 -
Trre8g02297 812 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 571 774 - -
Trre8g02297 812 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 180 IPR036426 -
Trre8g02297 812 PIRSF SRK 1 812 IPR024171 GO:0004674
Trre8g02297 812 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 18 757 - -
Trre8g02297 812 Gene3D - 20 146 IPR036426 -
Trre8g02297 812 Pfam D-mannose binding lectin 74 175 IPR001480 -
Trre8g02297 812 SMART serkin_6 495 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g02297 812 CDD B_lectin 31 149 IPR001480 -
Trre8g02297 812 ProSiteProfiles EGF-like domain profile. 283 319 IPR000742 -
Trre8g02297 812 ProSiteProfiles Protein kinase domain profile. 495 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g02297 812 Pfam S-locus glycoprotein domain 208 316 IPR000858 GO:0048544
Trre8g02297 812 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 21 146 - -
Trre8g02297 812 SUPERFAMILY Protein kinase-like (PK-like) 474 766 IPR011009 -
Trre8g02297 812 Gene3D Phosphorylase Kinase; domain 1 459 570 - -
Trre8g02297 812 CDD STKc_IRAK 501 766 - -
Trre8g02297 812 ProSitePatterns Serine/Threonine protein kinases active-site signature. 616 628 IPR008271 GO:0004672|GO:0006468
Trre8g02297 812 Gene3D Transferase(Phosphotransferase) domain 1 571 777 - -
Trre8g02297 812 CDD PAN_AP_plant 334 418 - -
Trre8g02297 812 ProSiteProfiles Bulb-type lectin domain profile. 25 145 IPR001480 -
Trre8g02297 812 SMART ntp_6 338 417 IPR003609 -
Trre8g02297 812 FunFam receptor-like serine/threonine-protein kinase SD1-8 466 570 - -
Trre8g02297 812 Pfam PAN-like domain 340 403 IPR003609 -
Trre8g02297 812 Pfam Protein tyrosine and serine/threonine kinase 498 764 IPR001245 GO:0004672|GO:0006468
Trre8g02297 812 SMART blect_4 31 149 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02297 Trre-Chr8 18392605 18395803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02297 435 797 Receptor kinase-like Gene Family AT4G23190 50.136 2.76e-121 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre8g02297 PK_Tyr_Ser-Thr 2.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02297 - - gmx:100808807 1106.66