Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02292 ATGGCTTTGACGATGAGGGCTGCAGTTGCAGCGGCGGCGGCCCCCCGTGGTTTACGCCGACTTTTCTGCACCAACCCAACCGCTTCTTCTCCCACTTTCCCTTTCACTTCAACGCCGCCTTCCGGAACTACTTCCACTCGACAGATGGCGGATCCCAGCACCAACCTCTTCGTCTCCGGGCTTAGCAAACGTACTACAACAGAGAATCTGAGGGCAGCATTTGAAAAGTTTGGTGAAGTTGTTCAAGCTAGGGTGGTAACTGATCGAGTCTCAGGTTACTCTAAAGGGTTTGGTTTTGTGCAATATGCTACTCTAGAAGGTGCTGCTAAGGGCATCGAAGGCATGGATGGAAAGTTTTTGGATGGCTGGGTTATATTTGCAGAGTATGCAAGACCAAGACCACCACCCGGAGAAGCTGCAAGTAATACAAATAGACAGTATGGCCGAACTTACTAA 456 0.5022 MALTMRAAVAAAAAPRGLRRLFCTNPTASSPTFPFTSTPPSGTTSTRQMADPSTNLFVSGLSKRTTTENLRAAFEKFGEVVQARVVTDRVSGYSKGFGFVQYATLEGAAKGIEGMDGKFLDGWVIFAEYARPRPPPGEAASNTNRQYGRTY 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02292 151 SUPERFAMILY RNA-binding domain, RBD 36 149 IPR035979 GO:0003676
Trre8g02292 151 SMART rrm1_1 55 128 IPR000504 GO:0003723
Trre8g02292 151 Gene3D - 40 151 IPR012677 -
Trre8g02292 151 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 54 132 IPR000504 GO:0003723
Trre8g02292 151 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 56 122 IPR000504 GO:0003723
Trre8g02292 151 MobiDBLite consensus disorder prediction 32 51 - -
Trre8g02292 151 PANTHER NUCLEOLAR PROTEIN 8 38 140 - -
Trre8g02292 151 FunFam RNA recognition motif-containing protein 35 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02292 Trre-Chr8 18355381 18358966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02292 55 113 C2H2 Transcription Factor Family AT2G19380 44.068 7.13e-12 60.1