Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02281 ATGCCAACAGTGTGGTTTTCTTTGAAGAAGTCACTACATTGCAAATCAGAACCATCAGATGTACATGATCCACAAACAAGGAAACATTTGAGTACAATTTTAACAAAAAGAGGAGGAAGATCAGGTTGTTCAAGATCAATAGCAAATCTAAAAGATGTTATTCATGGTAGCAAAAGACACATTGAAAAGCCACCAAGTTGTAGTCCAAGATCTATAGGTAGTAGTGAATTTCTTAACCCAATAACTCATGAAGTTATTTTGAGTAACTCAAGGTGTGAGTTAAAAATCACTGGATTTCAAGAAGGTGTTGGAAATGGTGGTAACAATGCTAGTGGTAGTAGTAGTGCTGGTTCTTCAACTTTTGTTGGTACTTTAAGACCTGGTACACCTGGTCCTGGAGGACACCCTACAATGCATTACTTTAATCCTTCTTTTAGGACTTCTTCAACTCCTCCAAGAAAATCACCTTTTCTTTTGTCAGAAGGTTCTGGTTTTCATGGTTCTGCTGGTGCTGGTGGTGGTGTTCATTCAAGTAATAGAATGTCCCTTGAGACAGATTCTAATGGTTCTTCAACTGTTACTTGTCACAAATGTGGTGAACAGTTTAACAAATGGGAAGCTGCTGAAGCTCATCATCTCTCCAAGCATGCTGTTACTGAACTTGTGGAAGGAGATTCATCAAGGAAAATAGTGGAGATAATATGCAGGACAAGTTGGTTAAAGTCAGAAAACAACTGTGGTAGAATTGAAAGAGTTTTGAAGGTACACAACATGCAAAAAACTTTAGCTAGATTTGAAGAATATAGGGAAATGGTGAAAATCAAAGCAAGTAAACTCCAGAAGAAGCATCCTAGATGTTTAGCTGATGGAAATGAGCTTTTAAGGTTCTATGGAACCACTGTTGCTTGTTCTCTTGGTCTCAATGGTTCTTCAAGTTTATGTCTATCAGAAAAATGTTGTGTTTGTAGAATTATTAGAAGTGGTTTTTCTGCTAAGAAGGAACTTAAAGGTGGCATAGGTGTTTTCACAACATCTACAAGTGGAAGAGCTTTTGAATCAATAGAGATTTTAGATAATGAACCATCATTAAGAAAAGCATTGATAGTTTGCAGAGTAATTGCTGGTAGGGTTCATAGGCCACTTGAGAACATTCAAGAAATGGCAGCACAAACTGGATTTGATTCATTGGCTGGAAAAGTAGGTCTTTATTCAAATATTGAGGAACTTTATTTGCTTAATCCTAGAGCTCTTCTTCCTTGTTTTGTGGTAATTTGCAAACCATGA 1284 0.3692 MPTVWFSLKKSLHCKSEPSDVHDPQTRKHLSTILTKRGGRSGCSRSIANLKDVIHGSKRHIEKPPSCSPRSIGSSEFLNPITHEVILSNSRCELKITGFQEGVGNGGNNASGSSSAGSSTFVGTLRPGTPGPGGHPTMHYFNPSFRTSSTPPRKSPFLLSEGSGFHGSAGAGGGVHSSNRMSLETDSNGSSTVTCHKCGEQFNKWEAAEAHHLSKHAVTELVEGDSSRKIVEIICRTSWLKSENNCGRIERVLKVHNMQKTLARFEEYREMVKIKASKLQKKHPRCLADGNELLRFYGTTVACSLGLNGSSSLCLSEKCCVCRIIRSGFSAKKELKGGIGVFTTSTSGRAFESIEILDNEPSLRKALIVCRVIAGRVHRPLENIQEMAAQTGFDSLAGKVGLYSNIEELYLLNPRALLPCFVVICKP 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02281 427 SUPERFAMILY ADP-ribosylation 218 426 - -
Trre8g02281 427 ProSitePatterns Zinc finger C2H2 type domain signature. 195 216 IPR013087 -
Trre8g02281 427 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 4 425 - -
Trre8g02281 427 FunFam C2H2-like zinc finger protein 217 426 - -
Trre8g02281 427 Gene3D - 208 426 - -
Trre8g02281 427 MobiDBLite consensus disorder prediction 104 125 - -
Trre8g02281 427 MobiDBLite consensus disorder prediction 104 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02281 Trre-Chr8 18271044 18272775 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02281 1 427 C2H2 Transcription Factor Family AT5G54630 68.898 0.0 589
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre8g02281 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02281 - - gmx:100787790 740.725