Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02280 ATGGGAATTCAGAAATATATGGTTGTCTTAAAGTTTAGTTTTTGTGTTCTTTTAGTTCTGCATCTTGTAGCAGCGGTTAGCGTTACAGAAAAGAAGGAAATACAAGATGGTTTTGTTAGAGAACTGTTTGATTCAGTATCTGGATTGGTAGATGAGCACACGGCAAAGGTATTAAGGACCACCTGCTGTGAAGATTTTATTCATTTAAAGAAAGAGGAATATCGTGATTTATGCCTCCCACTGGAATTGTTTGCTAGCACCAATAAACTCAGTTCCACAATTCAACCATTTGCACAAGCAGACATCCAAAAATTGCTTAATGGTTGCCATCCTCAAATCAAGGAAAACTTTCTTCATTGTTTGAGAAAAAATAATCTTCTATTATTTGTCTCAGGAGAAGACGATGATTCCAAGAAGTGGCATGTCACGAATATGGGATACCTTTTTTCCACATCTAGTATTCCTAGAAGAAATCAGGTCCGTGTTTTGCTCCAGCAAATATCAGAACCACCTAGTTCAGACCCCGCAGCTGGATCACCTACACCGAGTCTCACTCCATCACCTGAACCCATTCTCGCTCCATCGCCTGAACCCAGTCTATCTCCATCACCTGCTCCAGGGCCTCTACTTCCTAAACCGCCATCTCCTTCTTTCTCACCAACCCCATTTTTCCCAAAACTTACACCACCAGCAGCTGCTGATATTTCTGCTCCTCCATCTGCTGACACGAACGGGAAGGATAATAAGGATAGTACAAAAAGAACAGTTGTTCTTTCTGTAGTTATAACTATATTGGTGATATTTATAGTTGGAGCACTGTTCTTTTTATGCCTTCGTAAGAATCGCCGGCTTAGACAAAATGATGAGAGGCCACTTCTCAGTTTGAGCATGAATGACTATTCTTTTGGTCCTTCCAATCATGCTTTTGGAAATTCGACAAAAGGGGAGAAACATGGGTTTCAGTCATCAAGTAATAATTTTGGAGACAACAAGAAGACCTCGCTGCAAGAAAATCAATCAATAGGAGTTCATACTGCTGCCAGTTTACCATTTGAATTGACACCTCCTCCTGGGAGAGTGGGAACTGTCCATTCTGGAATGCCACCTTTAAGACCTCCTCCAGGAAGAATGAATCCTCTTCCCCCTGAGCGACCTTCATTTAGGCCTTCTAGTAATACTGCCGTCTCTACTGCTGCTGCAATTCCTCCTCCTCCTCCTCCTCGACAGTCTGGTGTTGGTAGTGCTCGACCTCCTGCTACTTCTTCACCACATTCAACACTAGCCGGTTCCAAACCTGCTGCTGCTCCTCGTCCTCCACTACCCCCTGCTCCGTCTCGTGCCAAACCTAGTCCTCCACCACCCCCTGCTCCGTCTGGTGCCAAACCTAGTCCTCCACCACCCCCTGCTCCGCCTGGTGCCAAACCTAGTCCTCCACCACCCCCGGCACCACCTGGTGCCAAACCCGGTCCTCCTCCCCCACCACCACCAGCACCACATGGTGCTAAACCTGGTCCTCGTCCACCACCTCCTCCTCCTAAGAGTGGTGTAGCTCCTCCTCGTCCTCCAATTGGCCCAAAGGTTAGTGGACTAAAAGCTACAGGGAATGCTGAAGCAGTTGCAGAAGGTGGAGCTGATACTTCCAAAGCCAAACTAAAGCCATTTTTCTGGGATAAGGTTCAAGCTACTTCAGATCAATCAATGGTTTGGAATCAGATCAAATCAGGATCATTCCAGTTTAACGAAGAGATGATAGAGACACTTTTTGGTTATAATGCTGTAAATAAAAACAATGGTCAGCGACAAAAGGAGTCTTCCTCCTCCCAAGATCCTTCACCTCAGTATATCCAGATCGTTGACAAAAAGAAATCACAAAATTTATTAATTCTGTTGCGAGCATTGAATGTGACAATGGAAGAAGTTTGTGATGCACTCTATGAAGGAAATGAGCTACCACCGGAGTTCCTTCAAACCTTGTTGAAGATGGCGCCAACATCAGACGAAGAACTTAAGCTTAGACTTTTTAGTGGTGATCTGTCTCAACTTGGGCCTGCTGACCGTTTCCTGAAAGCCATGGTTGACATTCCCTTTGCCTTTAAGCGAATGGACGTACTGCTTTTTATGTGTACATTTAAAGAGGAGCTCACTACTACGATGGAGTCTTTTGCAGTTTTAGAGGTTGCTTGTAAGGAACTAAGAAACAGCCGGCTGTTCCACAAGCTTCTCGAAGCTGTTCTCAAAACTGGAAACCGTATGAACGACGGAACATACCGTGGTGGTGCACAAGCATTTAAACTTGATACACTTTTGAAATTATCCGATGTAAAAGGAACAGATGGCAAGACTACACTCTTACACTTTGTAGTTCAAGAGATTATCCGCTCTGAGGGCATAAAAGCTGCCCGAGCGGCAAAAGAGAGCCAGGGTTTGTCCAATATTAAAACGGACGAGCTTCTTGAAGATAACACACGTGAAAAAGAAGACCAGTCCCGCGAACTTGGTCTTGAGATGGTTTCGCACTTGAGCAGTGAGCTCGAGAATGTTAGGAGAGGTTCCGTTCTAGATGCGGACAGCTTAACAGCTACCGCTGCCAAACTTGGCCACGGTCTCGTTAAAGCCAAAGACCTACTGAACAAAAACCTGAAGAATGTGGAAGATGATAGAGGGTTTCGTGAGACATTGGAAAGTTTTGTCCAAAATGCTGAGGCTGATGTTAAGAAACTGCTGGAAGATGAGAAGAAAATCATGGCTCTGGTGAAGAGCACGGGCGATTACTTTCACGGGAATGCAACAAAGGATGATGGCTTGCGATTGTTTGTAATTGTAAGAGACTTCTTAATAATGGTGGATAAGGTATGCAAGGAAGTGAGAGATGCACAGAAGAAACCATCAAAACCTGTAAAACAAGAAACTTCACGAGGATCATCTTCATCTGATACACGTCCACCACCTTCTGATTTTCGTGAGCGACTTTTTCCGGCTATCACTGAAAGAAGGATAGATGACCTTAGTTCAGATGATGAGAGTCCATAG 3030 0.4459 MGIQKYMVVLKFSFCVLLVLHLVAAVSVTEKKEIQDGFVRELFDSVSGLVDEHTAKVLRTTCCEDFIHLKKEEYRDLCLPLELFASTNKLSSTIQPFAQADIQKLLNGCHPQIKENFLHCLRKNNLLLFVSGEDDDSKKWHVTNMGYLFSTSSIPRRNQVRVLLQQISEPPSSDPAAGSPTPSLTPSPEPILAPSPEPSLSPSPAPGPLLPKPPSPSFSPTPFFPKLTPPAAADISAPPSADTNGKDNKDSTKRTVVLSVVITILVIFIVGALFFLCLRKNRRLRQNDERPLLSLSMNDYSFGPSNHAFGNSTKGEKHGFQSSSNNFGDNKKTSLQENQSIGVHTAASLPFELTPPPGRVGTVHSGMPPLRPPPGRMNPLPPERPSFRPSSNTAVSTAAAIPPPPPPRQSGVGSARPPATSSPHSTLAGSKPAAAPRPPLPPAPSRAKPSPPPPPAPSGAKPSPPPPPAPPGAKPSPPPPPAPPGAKPGPPPPPPPAPHGAKPGPRPPPPPPKSGVAPPRPPIGPKVSGLKATGNAEAVAEGGADTSKAKLKPFFWDKVQATSDQSMVWNQIKSGSFQFNEEMIETLFGYNAVNKNNGQRQKESSSSQDPSPQYIQIVDKKKSQNLLILLRALNVTMEEVCDALYEGNELPPEFLQTLLKMAPTSDEELKLRLFSGDLSQLGPADRFLKAMVDIPFAFKRMDVLLFMCTFKEELTTTMESFAVLEVACKELRNSRLFHKLLEAVLKTGNRMNDGTYRGGAQAFKLDTLLKLSDVKGTDGKTTLLHFVVQEIIRSEGIKAARAAKESQGLSNIKTDELLEDNTREKEDQSRELGLEMVSHLSSELENVRRGSVLDADSLTATAAKLGHGLVKAKDLLNKNLKNVEDDRGFRETLESFVQNAEADVKKLLEDEKKIMALVKSTGDYFHGNATKDDGLRLFVIVRDFLIMVDKVCKEVRDAQKKPSKPVKQETSRGSSSSDTRPPPSDFRERLFPAITERRIDDLSSDDESP 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02280 1009 MobiDBLite consensus disorder prediction 367 386 - -
Trre8g02280 1009 SMART it6_source 541 963 IPR015425 -
Trre8g02280 1009 Gene3D Formin, FH2 domain 547 979 IPR042201 -
Trre8g02280 1009 MobiDBLite consensus disorder prediction 169 251 - -
Trre8g02280 1009 MobiDBLite consensus disorder prediction 175 227 - -
Trre8g02280 1009 MobiDBLite consensus disorder prediction 982 1009 - -
Trre8g02280 1009 MobiDBLite consensus disorder prediction 306 333 - -
Trre8g02280 1009 SUPERFAMILY Formin homology 2 domain (FH2 domain) 612 972 - -
Trre8g02280 1009 Pfam Formin Homology 2 Domain 545 948 IPR015425 -
Trre8g02280 1009 Coils Coil 890 917 - -
Trre8g02280 1009 MobiDBLite consensus disorder prediction 434 525 - -
Trre8g02280 1009 ProSiteProfiles Formin homology-2 (FH2) domain profile. 541 974 IPR015425 -
Trre8g02280 1009 MobiDBLite consensus disorder prediction 414 428 - -
Trre8g02280 1009 MobiDBLite consensus disorder prediction 348 545 - -
Trre8g02280 1009 PANTHER FORMIN-RELATED 475 998 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Trre8g02280 1009 MobiDBLite consensus disorder prediction 957 1009 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02280 Trre-Chr8 18257204 18262658 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02280 519 1000 FH2 protein (formin) Gene Family AT5G54650 64.742 0.0 617