Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02273 ATGGCTAGCAGCACCAACTCCTCTGTCTTAGCTCTGGTGACATTGCCAAATAAGAGAAACAATTATGATGTGTTTGTCACCTTCAGAGGTGAAGACACTCGCTACAATTTCACTGATTTTCTTTTTAATGCCCTCCAAGATAAAGGAGTTTCTGTATTCAGGGATGACAGTAATCTTCCAAAAGGTGGACCCATTGGACCCGAACTCCTTCGTGCAATTGAAAACTCTCAAGTTTTCGTCGTCATCTTCTCAAAGAATTATGCTTCCTCAACTTGGTGCTTGCAAGAATTGGAAAAGATATGTGAATGCGTTCAAGTGTCTGGAAAACATGTTTTGCCTGTTTTCTATGATGTTGATCCTTCTGAGGTGCGAAAGCAAAGTGGGATTTATGGTGAAGCCTTTGTCGAACATGAACAAAGATTCCAAAGAGACTATGAGAAGGTGCAAAGATGGAAGAAAGCTCTCACACAAGTGGGAACAAAATCTGGTTGGGATGTGCGTCGTAAGCAACAATCTGCACAGATTAAAGAGATTGTTCAAAGAATAATAAATATTCTGGATTGCAATTTTACATGTGCTTCAAAAGAATTAGTTGGGATGGATTCTCCTATACAAGAGTTACAAAGTCATTTAATTTTGAACTCTGTTGATGATGTTCGGGCTATAGGAATTTGTGGAATGGGAGGAATAGGGAAGACAACCCTCGCCACTTCTTTGTATGCTAGAGTCTCTAATCAATTTGGTGCATGCTGTTTTATTGAAGATGTTAGCAAAGTTTATAGATCACATGATGGTCCACTTGGTGCACAAAAACAAATTCTACATAAGATACTAGGCAAAGAACAACATCAGATATGCAATAGTCATGATGCAATTAATCTGATGCAACGTAGACTAGGTCGTGTAAGGACCCTTCTTATTCTTGACAATGTTGATCATATTAAGCAACTAGAAATAATACCTGGGAATCGTGAATGGTTAGGTGCAGGTAGTAGAATCATTATCACTTCTAGAGATAAACATATCCTCACAAAGTATGGAGTGGATGTTGTCTACCAAGTTCCACTCTTGAATTTCACTAACTCTCAAGTATTATTTTGCCGACAAGCTTTCAAACTTGATCATATTTTGAATAGTTATGAAGGGTTGGTTAGAAGCATACTGCATTATACCAATGGCCTACCACTGGCAATTAAAGTATTGGGCTCATTTTTAAATGGTCTAAGTATCTCTGAATGGAGAAGTGCCTTGTCTAGATTGAGAGAAAGTCCAAACAAAGATGTCACGGGTGTTCTACAAATAAGTTTTGATTGGCTAGACAAGGAGGAAAAAGAAATATTTCTTCACATTGCTTGTTTTTTTAACATTGAAGACGTGGATTATGTTAAAAATATTCTAAGTTGTTGTGAATTTCATGCTGATATTGGATTGAGAATTCTCATTGATAAATCACTTATAAGAATTGAGAATGGTGAGATTATAATGCATAATTTATTGGAAGAGCTAGGCAGAAAAATTGTCCAAAAAAGTTCAAGCAAAGAGTCAAAAGAGTGGAAAAGGTTGTGGCTTCCTGAACAATTCCGCGATGTTATGTCGGACCATATGGAAAAGAATGTTGAAGCCATCGTTTTGAAGAAATCTTTTAGAGAAGAAGAAGAAGAAGAAGAAGAGATGATGATGATGATGATGGATGCAATGATGGTTGAATACTTTTCAAATCTTAGATTGCTCATCATCAAGGATATGGATCAATACATGAATGCATCAGGAAGCCTCAGTTGTCTTTCTAACGAATTAAGATATGTTGAATGGTTGGATTATCCATTCATGTACTTGCCATCAAGTTTTCAGCCCATTCGACTTGTTGAGTTGATATTGGAATATAGTTGCATCAAACAATTATGGAAAGACAAAAAGGTATGGTAA 1926 0.3671 MASSTNSSVLALVTLPNKRNNYDVFVTFRGEDTRYNFTDFLFNALQDKGVSVFRDDSNLPKGGPIGPELLRAIENSQVFVVIFSKNYASSTWCLQELEKICECVQVSGKHVLPVFYDVDPSEVRKQSGIYGEAFVEHEQRFQRDYEKVQRWKKALTQVGTKSGWDVRRKQQSAQIKEIVQRIINILDCNFTCASKELVGMDSPIQELQSHLILNSVDDVRAIGICGMGGIGKTTLATSLYARVSNQFGACCFIEDVSKVYRSHDGPLGAQKQILHKILGKEQHQICNSHDAINLMQRRLGRVRTLLILDNVDHIKQLEIIPGNREWLGAGSRIIITSRDKHILTKYGVDVVYQVPLLNFTNSQVLFCRQAFKLDHILNSYEGLVRSILHYTNGLPLAIKVLGSFLNGLSISEWRSALSRLRESPNKDVTGVLQISFDWLDKEEKEIFLHIACFFNIEDVDYVKNILSCCEFHADIGLRILIDKSLIRIENGEIIMHNLLEELGRKIVQKSSSKESKEWKRLWLPEQFRDVMSDHMEKNVEAIVLKKSFREEEEEEEEMMMMMMDAMMVEYFSNLRLLIIKDMDQYMNASGSLSCLSNELRYVEWLDYPFMYLPSSFQPIRLVELILEYSCIKQLWKDKKVW 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02273 641 Pfam NB-ARC domain 203 426 IPR002182 GO:0043531
Trre8g02273 641 Gene3D - 357 440 IPR042197 -
Trre8g02273 641 Gene3D - 16 187 IPR035897 -
Trre8g02273 641 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 450 IPR027417 -
Trre8g02273 641 Pfam TIR domain 21 192 IPR000157 GO:0007165
Trre8g02273 641 SUPERFAMILY Toll/Interleukin receptor TIR domain 19 164 IPR035897 -
Trre8g02273 641 PRINTS Disease resistance protein signature 298 312 - -
Trre8g02273 641 PRINTS Disease resistance protein signature 391 405 - -
Trre8g02273 641 PRINTS Disease resistance protein signature 221 236 - -
Trre8g02273 641 SMART till_3 21 161 IPR000157 GO:0007165
Trre8g02273 641 ProSiteProfiles TIR domain profile. 20 186 IPR000157 GO:0007165
Trre8g02273 641 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 22 634 IPR044974 GO:0006952
Trre8g02273 641 SUPERFAMILY "Winged helix" DNA-binding domain 427 530 IPR036390 -
Trre8g02273 641 Gene3D - 188 351 IPR027417 -
Trre8g02273 641 FunFam Disease resistance protein (TIR-NBS-LRR class) 18 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02273 Trre-Chr8 18193494 18195652 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02273 21 640 WRKY Transcription Factor Family AT4G12020 29.291 8.54e-71 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02273 - - mtr:11446628 788.489