Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02233 ATGGCTTCTACTTTAAGAAGATTACCAACACCTCAAGAAAGAGAGAGATGGAAACACTTTTTCGATACTCTCATTAATCCAAATGTGGCTCCAATTGAAATTCCTCAGCCTTTTTTCCAAAAAATGAAAAGTGAGTTTATAAAACACTCATTTGGCTGGATCAGGGGTCCAAACAAAACCAAAATCATGGTCAGGTATCACCAGTCTAATAGTGGTATCAAGCTTAGCTCTGGAGTGTGTGTTTCTCGAAGTTTTGGGTTTGTTTTACCAACAAGAGTTACACTCTGCTATGTGATCAAAGAGAATACCTTTTGGATGAGGATTTTACCTCCACTACAACCTGTGAAAGATGAATTTCCTCCAGAGGTAATCGTAGTTGATTCAAGTGATGATGAATGCCTAGAACAGAACAAGAATGGAATTGGTGGAACTGTGAATAGAAAAAACAAACCAACACTGAACAAAAGACAAATTTGCAAGAGGGAAACTTTGAAAAGGAAACAACAAAAGGAGATAATAGTTGATAATGATGTTCAAGATGAGGCAAATTTGAAGAGGTGCAAAAGACCTAGAGGCAATAATCAAGCTGTGCATTTGGAGTCCACCCGTGCATGTCAGAAACAAACAAATATGAAGTCCACCCCAAAGGAATTGAGCAAACAACGACAGCAAAATTTGAAAATTCCTCAATCTCAGAAACAAAAAGCTTTGAAGTCCACTGCAAAGAAATTAAATAAACAAGAGCATCATAAGAATACAAGGAGACCAGTGATTGTAAAATTGAAAGCTGATGGGAGTTATGTTTGGGAGAAGATTGTAACGGCAGCTGGTGCAACCAATGCTAAACCTCAAGTGATGCATTTTCCAAAGAAATTTGGTAGATTGGTTCTTGGAAAAAAGCAAAAGAAAATGTTGGTGAAAACTGAAGGAGGAGATTCATTCTTTTGCAATATCATCACAGCAAGAAGGAATAAAATTGAGAAATACATATCAAAAGAATGGACTAAATTTGTGCGAAGAAACGAGCTACAAGTTGGAGACAAGCTGATTTTCAATCTTCAAAAACCACCAACAAAACTGCTGATTCAGATCATCCGTTCCAATGGTCATAAGTGA 1116 0.3701 MASTLRRLPTPQERERWKHFFDTLINPNVAPIEIPQPFFQKMKSEFIKHSFGWIRGPNKTKIMVRYHQSNSGIKLSSGVCVSRSFGFVLPTRVTLCYVIKENTFWMRILPPLQPVKDEFPPEVIVVDSSDDECLEQNKNGIGGTVNRKNKPTLNKRQICKRETLKRKQQKEIIVDNDVQDEANLKRCKRPRGNNQAVHLESTRACQKQTNMKSTPKELSKQRQQNLKIPQSQKQKALKSTAKKLNKQEHHKNTRRPVIVKLKADGSYVWEKIVTAAGATNAKPQVMHFPKKFGRLVLGKKQKKMLVKTEGGDSFFCNIITARRNKIEKYISKEWTKFVRRNELQVGDKLIFNLQKPPTKLLIQIIRSNGHK 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02233 371 CDD B3_DNA 286 366 IPR003340 GO:0003677
Trre8g02233 371 MobiDBLite consensus disorder prediction 190 252 - -
Trre8g02233 371 Pfam B3 DNA binding domain 285 367 IPR003340 GO:0003677
Trre8g02233 371 MobiDBLite consensus disorder prediction 195 238 - -
Trre8g02233 371 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 145 368 IPR044837 -
Trre8g02233 371 ProSiteProfiles B3 DNA-binding domain profile. 271 368 IPR003340 GO:0003677
Trre8g02233 371 Gene3D - 230 369 IPR015300 -
Trre8g02233 371 SMART B3_2 272 368 IPR003340 GO:0003677
Trre8g02233 371 SUPERFAMILY DNA-binding pseudobarrel domain 282 368 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02233 Trre-Chr8 17901152 17903214 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre8g02233 B3 1.6e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02233 - K13193 tpra:123904760 202.986