Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02230 ATGGCATGTAGTAGCATCCAACCTGTCTCTTCACCTAAGATGACATGGAAATATGATGTATTTGTGAGCTTTAGAGGTGAAGATACGCGCAAAAATTTCACTGATCACCTTTTTGGCGCTTTTATTAGAAATGGCATTGTTGCCTTTCGGGATGATACAAAGCTCAAGAAAGGGGAACATATATCATCTGAGCTTCTAAAAGCCATTGAAGGATCCCATGTTTTGATTGTCATCTTCTCAAGAAACTTTGTTTCTTCCACATGGTGCTTGCAGGAACTAGCAAAAATTGCTGAATGCAATGTATTAGGACAAACTGTGCTACCTATTTTCTATGATGTGAGTCCATCTGAGGTACGAAAGCAAAGCGGAGATTTTGAAAAAGCCTTTATGGAGCATGAAGAAAGATTCAAAGAAAACTTAGAGGAAGTGCAAAGATGGAGGGGTGCTCTAACACAAGTAGCCAACCTCTCTGGTTGGGATGTAAAGGATAAGCCAGAATATGCAGAAATTGGAAAAATTATTAAAGAGGTAACAAGCTTATTGGGTCACAAATTTTCAACTTCACCTGACGATATAGTTGGAATGCACTCACAAGTGGAAGAATTAGAAAAACTTCTGATTTTGGACTCCGATGATGATGTTCGAGTTGTTGGGATTTGTGGAATGGGCGGAATAGGGAAGACAACTCTTGCTAATGCTTTGTATGCTAGAATCTCTAATCAATTTGAAAATTGCTGCTATATTGATGATGTAAGTAAAACTTATGGAGGTTATGGCCCAATTGGAGTGCAAAAGCAACTTCTTTGTCAAACTCTAAAAGAAGAAAATATTCAGATATGCAATCTTTATATGGCATCTAATTTGATTCAAACTCGGCTATGTCAAATAAAATCCCTTGTGATCCTTGATAATGTTGATCAAGTTGAACAACTGGATAAATTAGGCATGAAACGAGAAAGGCTAGGCACTGGGAGCAGAATCATCATAATTTCTAGAGATTGTCATATCTTGAGAGAGCATGGAATAGATGAAGTTTATCAAGTTCAACTCTTGGATCATAATAATGCCCTTCAATTGTTTTGTAGGAAAGCTTTCAAAAGTGATGATATCGTGAGTGGTTACGAACAGTTGACATATGATGTATTAATATATGCCAGTGGCCTTCCATTAGCAATTAAAGCGTTGGGCTCATTTTTGTATGGTCGTGATGCCTCTGAATGGAGAAGTGCATTGGCAAGATTAAGGGAGAATCCAAGACCAGATATTATGGATGTACTCCGAATTAGTTTTGATGGGCTAGAGGATACGGAAAAGAATATATTTCTAGATATTGCATGTTTCTTTTATGGAGACAATGTGACACGTGTGAAAGAAATTTTAGATTTTCGTGGATTTCATCCTGAAATTGGTTTTAGAGTTCTCATTGATAAATCCTTCATAACTTGTGAAAAGGAGAGAATTTGTATGCATGATTTGTTCAAAGAACTTGGCAAGAGCATCATTAGAGAAAAATCACCTAAAGAACCAAGAAAGTGGAGTAGGATTTGGAACTACAACGATTTCCACAATGTTATCACAGAAAACATGGAAACAGAAAACCTAGAAGCCATAGTTCTGCCGCCTTCTGTTTATGAAATTGATAAAATACCAGCAATGTCAACAGGAAGTCTCAGGGCAGAAAGTTTAGCACAAATGAATCGCCTTAAATTGTTCATGCTGTGGAATTTGAATTTCTCAGGAAGTCTCAATTTTCTTTCTAGTGAATTGGGGTATCTATGTTGGGATAAATACCCTTTCAGTTGTTTGCCATCGAGTTTTAAGCCAGATAAACTTGTTGAACTGATCCTACCTCGTAGCAACATCAGACAACTATGGGAGGGCACAAAGTCTCCGCACAATTTGACGTATATCGATCTTTCTCATTCAAAAAATCTTATGATGACGCCAAATTTTTTGGAGATTCCGAATCTTGAGTTCCTAAATCTTGAAGGATGTATAAAACTCGTACAGATTGATCCATCAATTGGTATCTTAAGAAGGCTTTCCAAATTAAATTTGAAAAATTGTACAAATCTGGTCAGTATTCCTAACAACATTTTTGGTCTGAGTTCTCTCGAGTATCTAAATCTCTCAGGCTGTCGAAATTTACTTAATAGTAAATTGTTAAAGAGACAGTGGCAAATAGAAAATTTGGAGATGCTTGATAGGAAAGAAAGTACTTCCCAATATCAATCAACAGCATTCACAGTTTTGAAGCCGTCTTTTTGGTTTTGGAAGATTTTTCAAAAACAAGAAGATTCAGTATGCTTATTGTTGCCTTCATCGTCTCATCTGTCATGTTTACAAAATCTTGACATAAGTTTCTGCAATCTTCTTCAAATCCCTAATGCCATTGGGTGGTTACATTTCTTAGAAATGCTAAATTTGGGGGGTAACAATTTTGTTACATTACCTTCTAGCATCAAGGAACTTTTTAAACTTAGAGAATTGAACTTGGGGCACTGTAAGCAGCTGAAATATTTACCTGAACTTCCATCAAAAACTGTTTTGCCAGTAAGAGAAACTTTTTTCGTCAGGGGGGGATTAAATATTTTTGATTGCCCCGGTTTGATTGTGACGGAACGCTGTTATAGAATGGCTTTTTCTTGGATGATACAACTTCTTAAGGTGCACATGAAATCTGACCTCCAAATGGCTCAGATTGATATTGTTATTCCAAAAACTCAAATTCCAATGTGGTTCCACAAACAAAATGTATGTAGTTCAATAAGCATGGATCCATTACCAAATATGGATGACAAGAATTTGATAGGTGTTGCTTGCTGCATAACATTTGTAGCACATGATGATCCAACTATTTTAGGTACTCGATTTAAACCTTATATTAGGTTGGGTTTTAAAATCAAAGGGCGTGGAGTCTATCCCTTTAATCGTATACATCTTGAAAAAGATTTGGTCACGGTTGAGTTAGATCACCTGTTGCTAATGTTTTTCAGTAAGGCAGATTTTATTGAAACAAAAAGTTGTTTTATGACAAATGGAATGTATGATAATAGTATTATTGAATTGGTAACCGATGTTGAGCAGCTTCCTGGTTTGCATTTGGAGATCAAAAGTTGTGGTTATCATTGGATATTTAAGGAGGATCTGGAACAATTAAACCCTGAAATGATGTACACTGGAAATTCCTCAGTTCAACCATATTATTGA 3210 0.362 MACSSIQPVSSPKMTWKYDVFVSFRGEDTRKNFTDHLFGAFIRNGIVAFRDDTKLKKGEHISSELLKAIEGSHVLIVIFSRNFVSSTWCLQELAKIAECNVLGQTVLPIFYDVSPSEVRKQSGDFEKAFMEHEERFKENLEEVQRWRGALTQVANLSGWDVKDKPEYAEIGKIIKEVTSLLGHKFSTSPDDIVGMHSQVEELEKLLILDSDDDVRVVGICGMGGIGKTTLANALYARISNQFENCCYIDDVSKTYGGYGPIGVQKQLLCQTLKEENIQICNLYMASNLIQTRLCQIKSLVILDNVDQVEQLDKLGMKRERLGTGSRIIIISRDCHILREHGIDEVYQVQLLDHNNALQLFCRKAFKSDDIVSGYEQLTYDVLIYASGLPLAIKALGSFLYGRDASEWRSALARLRENPRPDIMDVLRISFDGLEDTEKNIFLDIACFFYGDNVTRVKEILDFRGFHPEIGFRVLIDKSFITCEKERICMHDLFKELGKSIIREKSPKEPRKWSRIWNYNDFHNVITENMETENLEAIVLPPSVYEIDKIPAMSTGSLRAESLAQMNRLKLFMLWNLNFSGSLNFLSSELGYLCWDKYPFSCLPSSFKPDKLVELILPRSNIRQLWEGTKSPHNLTYIDLSHSKNLMMTPNFLEIPNLEFLNLEGCIKLVQIDPSIGILRRLSKLNLKNCTNLVSIPNNIFGLSSLEYLNLSGCRNLLNSKLLKRQWQIENLEMLDRKESTSQYQSTAFTVLKPSFWFWKIFQKQEDSVCLLLPSSSHLSCLQNLDISFCNLLQIPNAIGWLHFLEMLNLGGNNFVTLPSSIKELFKLRELNLGHCKQLKYLPELPSKTVLPVRETFFVRGGLNIFDCPGLIVTERCYRMAFSWMIQLLKVHMKSDLQMAQIDIVIPKTQIPMWFHKQNVCSSISMDPLPNMDDKNLIGVACCITFVAHDDPTILGTRFKPYIRLGFKIKGRGVYPFNRIHLEKDLVTVELDHLLLMFFSKADFIETKSCFMTNGMYDNSIIELVTDVEQLPGLHLEIKSCGYHWIFKEDLEQLNPEMMYTGNSSVQPYY 1069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02230 1069 PRINTS Disease resistance protein signature 216 231 - -
Trre8g02230 1069 PRINTS Disease resistance protein signature 292 306 - -
Trre8g02230 1069 PRINTS Disease resistance protein signature 385 399 - -
Trre8g02230 1069 PRINTS Disease resistance protein signature 700 716 - -
Trre8g02230 1069 SUPERFAMILY Toll/Interleukin receptor TIR domain 13 159 IPR035897 -
Trre8g02230 1069 ProSiteProfiles TIR domain profile. 16 181 IPR000157 GO:0007165
Trre8g02230 1069 Pfam TIR domain 17 176 IPR000157 GO:0007165
Trre8g02230 1069 Pfam C-JID domain 905 1051 IPR045344 -
Trre8g02230 1069 Pfam Leucine Rich Repeat 610 629 IPR011713 -
Trre8g02230 1069 SMART till_3 17 156 IPR000157 GO:0007165
Trre8g02230 1069 Gene3D Ribonuclease Inhibitor 762 887 IPR032675 -
Trre8g02230 1069 Gene3D Ribonuclease Inhibitor 527 750 IPR032675 -
Trre8g02230 1069 Gene3D - 350 434 IPR042197 -
Trre8g02230 1069 Pfam NB-ARC domain 198 417 IPR002182 GO:0043531
Trre8g02230 1069 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 18 720 IPR044974 GO:0006952
Trre8g02230 1069 Gene3D - 182 345 IPR027417 -
Trre8g02230 1069 SUPERFAMILY L domain-like 489 843 - -
Trre8g02230 1069 FunFam Disease resistance protein (TIR-NBS-LRR class) 14 183 - -
Trre8g02230 1069 Gene3D - 12 181 IPR035897 -
Trre8g02230 1069 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 444 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02230 Trre-Chr8 17886967 17890715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02230 18 807 WRKY Transcription Factor Family AT4G12020 29.867 5.94e-86 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02230 - - tpra:123922646 1514.98