Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02226 ATGTGCAGGACAATGTGTACACACCATGGTAATAAGGCACGTTTTTCAACCTTGCCTATTCGCAAAAATCTAAACGCTCTCTTCTCTTCTTCAACAAACGCTCTCTTCTCTTTCTACAACAAATCTTCGATTCAAGATGCCGATGCAAATTTTCCTAAGATCCAAGACAAGGAAGGGATTCCACCAGATCAGCAAAGGCTTATCTTTGCTGGTAAACAATTGGAAGATGGCCGCACCCTTGCGGATTACAACATCCAAAAGGAGTCCACGCTTCATCTTGTGCTGCGGTTAAGAGGTGGCATGCAGATATTCGTTAAGACCTTGACTGGAAAAACAATCACCCTTGAGGTTGAATCCTCTGATACAATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCTCCTGATCAGCAGAGGCTTATCTTTGCAGGGAAGCAACTTGAGGATGGAAGAACCCTAGCTGATTACAACATCCAGAAGGAATCTACCCTTCATTTGGTGCTCAGATTGAGAGGTGGAATGCAGATTTTTGTTAAGACTTTAACTGGAAAGACTATTACTTTAGAGGTCGAGAGTTCAGATACTATTGATAATGTGAAAGCTAAGATTCAGGATAAGGAGGGTATCCCTCCAGATCAGCAGAGGCTTATCTTTGCAGGGAAACAGCTTGAGGATGGAAGAACCCTAGCTGATTACAACATCCAGAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGTGGAATGCAGATTTTTGTTAAGACTTTGACAGGAAAAACTATTACTTTGGAGGTCGAGAGTTCAGATACCATTGATAATGTGAAAGCTAAGATTCAGGATAAAGAGGGTATCCCTCCAGATCAGCAGAGGCTTATCTTTGCTGGTAAGCAACTTGAGGATGGAAGAACCCTAGCTGATTATAACATCCAAAAGGAATCTACCCTTCATTTGGTGCTTAGATTGAGAGGTGGGATGCAAATTTTTGTGAAGACTTTGACAGGAAAGACTATTACTCTGGAGGTTGAGAGTTCAGATACTATTGATAATGTGAAAGCGAAGATTCAAGATAAGGAAGGTATCCCTCCCGATCAGCAGAGGCTTATCTTTGCTGGTAAGCAACTTGAAGATGGTAGGACACTTGCTGATTATAACATCCAAAAGGAATCCACTCTTCATTTGGTTTTGCGTCTTCGTGGGGGTATGCAAATTTTTGTTAAGACCCTTACTGGAAAGACCATAACTTTGGAGGTTGAGAGTTCCGATACAATTGACAATGTAAAAGCAAAAATTCAGGATAAAGAGGGTATTCCTCCAGACCAGCAGAGGCTAATCTTTGCCGGGAAGCAGTTGGAAGATGGTCGTACTCTGGCTGATTATAATATCCAGAAGGAATCTACTCTGCACTTGGTTTTGAGGCTTCGTGGTGGCATGCAAATATTTGTGAAGACCCTTACCGGGAAGACTATTACCTTGGAGGTGGAAAGCTCTGATACAATCGATAATGTGAAAGCAAAGATTCAGGATAAGGAGGAAAGAATCTACCCTGCACCTTGTTCTTCGTCTCCGTGGTGGCCTCTAAGTGTGCCTGCAGTTGAATCTGTTTGA 1617 0.4242 MCRTMCTHHGNKARFSTLPIRKNLNALFSSSTNALFSFYNKSSIQDADANFPKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEERIYPAPCSSSPWWPLSVPAVESV 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02226 538 CDD Ubl_ubiquitin 329 404 - -
Trre8g02226 538 ProSitePatterns Ubiquitin domain signature. 355 380 IPR019954 -
Trre8g02226 538 SUPERFAMILY Ubiquitin-like 53 100 IPR029071 -
Trre8g02226 538 FunFam Polyubiquitin 3 101 176 - -
Trre8g02226 538 PRINTS Ubiquitin signature 132 152 IPR019956 -
Trre8g02226 538 PRINTS Ubiquitin signature 153 174 IPR019956 -
Trre8g02226 538 PRINTS Ubiquitin signature 111 131 IPR019956 -
Trre8g02226 538 ProSiteProfiles Ubiquitin domain profile. 481 514 IPR000626 GO:0005515
Trre8g02226 538 Pfam Ubiquitin family 179 250 IPR000626 GO:0005515
Trre8g02226 538 Pfam Ubiquitin family 407 478 IPR000626 GO:0005515
Trre8g02226 538 Pfam Ubiquitin family 483 515 IPR000626 GO:0005515
Trre8g02226 538 Pfam Ubiquitin family 103 174 IPR000626 GO:0005515
Trre8g02226 538 Pfam Ubiquitin family 255 326 IPR000626 GO:0005515
Trre8g02226 538 Pfam Ubiquitin family 331 402 IPR000626 GO:0005515
Trre8g02226 538 Pfam Ubiquitin family 53 98 IPR000626 GO:0005515
Trre8g02226 538 Gene3D - 405 480 - -
Trre8g02226 538 Gene3D - 253 328 - -
Trre8g02226 538 Gene3D - 178 252 - -
Trre8g02226 538 Gene3D - 101 177 - -
Trre8g02226 538 Gene3D - 51 100 - -
Trre8g02226 538 Gene3D - 329 404 - -
Trre8g02226 538 ProSitePatterns Ubiquitin domain signature. 203 228 IPR019954 -
Trre8g02226 538 Gene3D - 481 524 - -
Trre8g02226 538 CDD Ubl_ubiquitin 177 252 - -
Trre8g02226 538 ProSitePatterns Ubiquitin domain signature. 431 456 IPR019954 -
Trre8g02226 538 FunFam Polyubiquitin 3 177 252 - -
Trre8g02226 538 SUPERFAMILY Ubiquitin-like 252 328 IPR029071 -
Trre8g02226 538 ProSiteProfiles Ubiquitin domain profile. 405 480 IPR000626 GO:0005515
Trre8g02226 538 ProSiteProfiles Ubiquitin domain profile. 329 404 IPR000626 GO:0005515
Trre8g02226 538 FunFam Polyubiquitin 3 253 328 - -
Trre8g02226 538 CDD Ubl_ubiquitin 405 480 - -
Trre8g02226 538 SUPERFAMILY Ubiquitin-like 403 480 IPR029071 -
Trre8g02226 538 ProSiteProfiles Ubiquitin domain profile. 101 176 IPR000626 GO:0005515
Trre8g02226 538 SMART ubq_7 253 324 IPR000626 GO:0005515
Trre8g02226 538 SMART ubq_7 481 537 IPR000626 GO:0005515
Trre8g02226 538 SMART ubq_7 329 400 IPR000626 GO:0005515
Trre8g02226 538 SMART ubq_7 405 476 IPR000626 GO:0005515
Trre8g02226 538 SMART ubq_7 101 172 IPR000626 GO:0005515
Trre8g02226 538 SMART ubq_7 177 248 IPR000626 GO:0005515
Trre8g02226 538 SMART ubq_7 24 96 IPR000626 GO:0005515
Trre8g02226 538 ProSiteProfiles Ubiquitin domain profile. 53 100 IPR000626 GO:0005515
Trre8g02226 538 ProSitePatterns Ubiquitin domain signature. 279 304 IPR019954 -
Trre8g02226 538 PANTHER UBIQUITIN 481 515 - -
Trre8g02226 538 SUPERFAMILY Ubiquitin-like 176 252 IPR029071 -
Trre8g02226 538 ProSiteProfiles Ubiquitin domain profile. 253 328 IPR000626 GO:0005515
Trre8g02226 538 SUPERFAMILY Ubiquitin-like 99 176 IPR029071 -
Trre8g02226 538 ProSiteProfiles Ubiquitin domain profile. 177 252 IPR000626 GO:0005515
Trre8g02226 538 FunFam Polyubiquitin 5 41 100 - -
Trre8g02226 538 CDD Ubl_ubiquitin 101 176 - -
Trre8g02226 538 FunFam Polyubiquitin 3 329 404 - -
Trre8g02226 538 FunFam Polyubiquitin-C 481 514 - -
Trre8g02226 538 SUPERFAMILY Ubiquitin-like 480 515 IPR029071 -
Trre8g02226 538 CDD Ubl_ubiquitin 253 328 - -
Trre8g02226 538 FunFam Polyubiquitin 3 405 480 - -
Trre8g02226 538 SUPERFAMILY Ubiquitin-like 328 404 IPR029071 -
Trre8g02226 538 ProSitePatterns Ubiquitin domain signature. 127 152 IPR019954 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02226 Trre-Chr8 17863632 17867734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02226 481 514 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 100.000 1.88e-14 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02226 K08770 - csin:114305206 892.108