Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02222 ATGAGCCGAAACATGAACAATTTCACGCCTTTGCCAGGGCTTTGGAGAACAGGTTCTAGAGCTTATGGTGATGCTTCTCACAATTCCAATAATAGTCATGAATTCAATGAAGTGCCTGTGTTTTACAGATCTCATCACTCTACTAGGGCCAGTGATGAGAGGAGTTCAGGTGCACAAGATCCGCTGCGGTTGTGGGAAGTCAGAAGAACTCCTACAGAACATTACAGGATACCAAGTTTTCCAGCACAACCACCTAGAAGACAACAAACTTATGTTCAAAATGAGGACATGAGAAGGGGTTTCAATTTCAACCCAACCAGACTCAGACAGATTTTTCAACATTCACCTTCAAGATCAACATCAACAGAACAAACAAACATACAAGTTCCACAATTAGTAGAAAATTCAAAATCAACTATTTTAAGCAAGTTAAGGAAAATAGTCTATGATCCTACACCGAAGCGGTTAGCTAGAAGAGTGAGCTTATATTATAGAGGAAATGCTGCAAATGATTTGAAAGATAGTGTGAAAGAAAATAAGGAAGATGGTATGAGATGTTCTATTTGCTTGGAAGATTTTGAAGCCAAAGAAGAAGTGATGCTTACTCCATGCAACCACATGTTTCATGATGATTGTATTGTTACTTGGTTAACAAGTAAAGGTCAGTGTCCAGTTTGTAGGTTTGTGGTTTTTGAGGGAGTGAAAGGAAATTCTTCATCTTTTAATAGGAATGATATTACCAATTTGGAACCTAATGACATGATCTCTGGAGAGCTTTTGTCAATTTTGAGGGCTATGGAAGAAGCTTTTCAGTTAGAAAGTGAGTTAGTGGCAATGTTTTAA 843 0.3796 MSRNMNNFTPLPGLWRTGSRAYGDASHNSNNSHEFNEVPVFYRSHHSTRASDERSSGAQDPLRLWEVRRTPTEHYRIPSFPAQPPRRQQTYVQNEDMRRGFNFNPTRLRQIFQHSPSRSTSTEQTNIQVPQLVENSKSTILSKLRKIVYDPTPKRLARRVSLYYRGNAANDLKDSVKENKEDGMRCSICLEDFEAKEEVMLTPCNHMFHDDCIVTWLTSKGQCPVCRFVVFEGVKGNSSSFNRNDITNLEPNDMISGELLSILRAMEEAFQLESELVAMF 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02222 280 CDD RING-H2_SIS3 184 230 - -
Trre8g02222 280 ProSiteProfiles Zinc finger RING-type profile. 186 227 IPR001841 -
Trre8g02222 280 SUPERFAMILY RING/U-box 179 233 - -
Trre8g02222 280 Pfam Ring finger domain 185 227 IPR001841 -
Trre8g02222 280 SMART ring_2 186 226 IPR001841 -
Trre8g02222 280 FunFam RING/U-box superfamily protein 170 244 - -
Trre8g02222 280 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 56 228 - -
Trre8g02222 280 SMART ringv_2 185 227 IPR011016 GO:0008270
Trre8g02222 280 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 170 240 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02222 Trre-Chr8 17826021 17827717 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02222 135 270 C3H Transcription Factor Family AT3G58720 50.704 3.24e-40 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02222 - - psat:127107286 456.447