Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02199 ATGGCCAAATTCCGAGATGCATCCAAGACTCTAGAACATATCAAAGAGGGCATAGTCTATTCATTTGAAAATTTGGACTCTGCCACAAATGGTGGAACCTACAAAACTACCAAACATGAATACAAACTAACTTTTCAGTTTGGATCTAAAGTAACCCCACTTGGACCAAACAAACTCACCAACCTATCTCCTTTTAAATTTGTTCCTATTGGGGAAGTCATTAATGGCAGCTATGACAGCGATTACTTAGTTGATGTAATTGGAATGCTGACCGGAGTTGGGGAAGAAAGACAATATGAAGCCCGTGGACAAAGCACCAAACTCAATGTCATTGAACTTGAGGCTGATGGGGAAAAGATTCAGTGCACTCTTTTTGGTTCTTACGTTGATGAGCTCAACAATTTTCTTTCCTCCGGCGAAACACAAAATGCTGTTGTTATCATCATGCTTGGAAAGGTCAAACTATTTCAAGAGAAACTTCATATCCAAAATTGCCTCAATTGCACCAAAGTTTTTTACAATCCTGTCAATGATGATGTCACTTCCTTAAGGACTAGGATGGTTCAAAATCTTGACACACCATCTCCTCTCATCCTTACCCAAATCAATGCACAACTTAGAGTTGATCCTCTCCAAGAATTTGTCTATTCCACTCCTAGGAACAATATCCAAGGTCTTCTTAATTGTGAAGAGGATGCTATTTTTGCTGTTCTTGGTACTATCAAACACATTGTCAACAATGATAATTGGTTCTATACGGCATGTGCATGCAACAAAAGTGTGTATCCAGATTCGGGCATGTATTTTTGCGAAAAATGCAACAAGCATGTCAAAAATGTTTCACCAAGATTTTCCATCAAAGTTCGTGTTATGGATGATACCGATAGCGCCACATTTGTGCTTTTTGATCATGATGCTGCAATGTTGTTCAACAAATCATGTGCCGAAGTATTGCGCAGTCGTGACACCAGGGCTGCACCCACTGTTCTTCTTGCTGAAATTAAAGCATTGGTCAATTCCACATATCTATTCAAAGTTGAGTGCAAAGCTCCCGTGAGTCATAGGTTTGAGCCTTCTTTCCGTGTTCGCAAAATTTGCACCGACATGATTTTAATTAATCAATTCAAGTCCAAGTGGGAGCATGAAGAATCTACCTTTGCAAAAAATGCCAATGAAATGAATTCTTTGAGTGCATTGCATGATACTCAAATTGGATCTTCAGCAAACTATCTTGATACTAACAATGTTGAGCCACTAACAGCAATTTCTACAAAGGAGACAGAGATAAAATTGGATTGTGGAAAGTTGGGCATCTCACAAGACTTGATGCCATCATTCCAAGAAGCTGTCATTGATGTTGATGACATCCCAAATCCCAAAAAAATTGATGCAAAGGGCAAGGCAAAAATGGATAACCATACTACCAAAGGAAAGAAGGCTTCACCCAATGATGAAACCAAAACTGAAGACATGAACCTTCCAATTAAGCTTCTCAAAAGGGCAATTAAGATTGAAAAGATCTAA 1524 0.3885 MAKFRDASKTLEHIKEGIVYSFENLDSATNGGTYKTTKHEYKLTFQFGSKVTPLGPNKLTNLSPFKFVPIGEVINGSYDSDYLVDVIGMLTGVGEERQYEARGQSTKLNVIELEADGEKIQCTLFGSYVDELNNFLSSGETQNAVVIIMLGKVKLFQEKLHIQNCLNCTKVFYNPVNDDVTSLRTRMVQNLDTPSPLILTQINAQLRVDPLQEFVYSTPRNNIQGLLNCEEDAIFAVLGTIKHIVNNDNWFYTACACNKSVYPDSGMYFCEKCNKHVKNVSPRFSIKVRVMDDTDSATFVLFDHDAAMLFNKSCAEVLRSRDTRAAPTVLLAEIKALVNSTYLFKVECKAPVSHRFEPSFRVRKICTDMILINQFKSKWEHEESTFAKNANEMNSLSALHDTQIGSSANYLDTNNVEPLTAISTKETEIKLDCGKLGISQDLMPSFQEAVIDVDDIPNPKKIDAKGKAKMDNHTTKGKKASPNDETKTEDMNLPIKLLKRAIKIEKI 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02199 507 Gene3D - 2 55 IPR012340 -
Trre8g02199 507 Gene3D - 216 374 IPR012340 -
Trre8g02199 507 SUPERFAMILY Nucleic acid-binding proteins 65 185 IPR012340 -
Trre8g02199 507 Pfam Replication factor-A C terminal domain 235 350 IPR013955 -
Trre8g02199 507 CDD RPA1_DBD_B_like 85 187 - -
Trre8g02199 507 Gene3D - 62 193 IPR012340 -
Trre8g02199 507 CDD RPA1_DBD_C 230 349 IPR047192 -
Trre8g02199 507 MobiDBLite consensus disorder prediction 461 489 - -
Trre8g02199 507 SUPERFAMILY Nucleic acid-binding proteins 230 374 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02199 Trre-Chr8 17689058 17691646 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02199 7 346 Core DNA Replication Machinery Family AT5G08020 21.368 1.10e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02199 - - mtr:120579381 523.857