Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02198 ATGGCCAAATTCCGAGATGCATCCAAGACTCTAGAACATATCAAAGAGGGCATAGTCTATTCATTTGAAAATTTGGACTCTGCCACAAATGGTGGAACCTACAAAACTACCAAACATGAATACAAACTAACTTTTCAGTTTGGATCTAAAGTAACCCCACTTGGACCAAACAAACTCACCAACCTATCTCCTTTTAAATTTGTTCCTATTGGGGAAGTCATTAATGGCAGCTATGACAGCGATTACTTAGTTGATGTAATTGGAATGCTGACCGGAGTTGGGGAAGAAAGACAATATGAAGCCCGTGGACAAAGCACCAAACTCAATGTCATTGAACTTGAGGCTGATGGGGAAAAGATTCAGTGCACTCTTTTTGGTTCTTACGTTGATGAGCTCAACAATTTTCTTTCCTCCGGCGAAACACAAAATGCTGTTGTTATCATCATGCTTGGAAAGGTCAAACTATTTCAAGTCATTGATATGGAATGTGTAGAGAAACTTCATATCCAAAATTGCCTCAATTGCACCAAAGTTTTTTACAATCCTGTCAATGATGATGTCACTTCCTTAAGGACTAGGATGGTTCAAAATCTTGACACACCATCTCCTCTCATCCTTACCCAAATCAATGCACAACTTAGAGTTGATCCTCTCCAAGAATTTGTCTATTCCACTCCTAGGAACAATATCCAAGGTCTTCTTAATTGTGAAGAGGATGCTATTTTTGCTGTTCTTGGTACTATCAAACACATTGTCAACAATGATAATTGGTTCTATACGGCATGTGCATGCAACAAAAGTGTGTATCCAGATTCGGGCATGTATTTTTGCGAAAAATGCAACAAGCATGTCAAAAATGTTTCACCAAGATTTTCCATCAAAGTTCGTGTTATGGATGATACCGATAGCGCCACATTTGTGCTTTTTGATCATGATGCTGCAATGTTGTTCAACAAATCATGTGCCGAAGTATTGCGCAGTCGTGACACCAGGGCTGCACCCACTGTTCTTCTTGCTGAAATTAAAGCATTGGTCAATTCCACATATCTATTCAAAGTTGAGTGCAAAGCTCCCGTGAGTCATAGGTTTGAGCCTTCTTTCCGTGTTCGCAAAATTTGCACCGACATGATTTTAATTAATCAATTCAAGTCCAAGTGGGAGCATGAAGAATCTACCTTTGCAAAAAATGCCAATGAAATGAATTCTTTGAGTGCATTGCATGATACTCAAATTGGATCTTCAGCAAACTATCTTGATACTAACAATGTTGAGCCACTAACAGCAATTTCTACAAAGGAGACAGAGATAAAATTGGATTGTGGAAAGTTGGGCATCTCACAAGACTTGATGCCATCATTCCAAGAAGCTGTCATTGATGTTGATGACATCCCAAATCCCAAAAAAATTGATGCAAAGGGCAAGGCAAAAATGGATAACCATACTACCAAAGGAAAGAAGGCTTCACCCAATGATGAAACCAAAACTGAAGACATGAACCTTCCAATTAAGCTTCTCAAAAGGGCAATTAAGATTGAAAAGATCTAA 1545 0.3877 MAKFRDASKTLEHIKEGIVYSFENLDSATNGGTYKTTKHEYKLTFQFGSKVTPLGPNKLTNLSPFKFVPIGEVINGSYDSDYLVDVIGMLTGVGEERQYEARGQSTKLNVIELEADGEKIQCTLFGSYVDELNNFLSSGETQNAVVIIMLGKVKLFQVIDMECVEKLHIQNCLNCTKVFYNPVNDDVTSLRTRMVQNLDTPSPLILTQINAQLRVDPLQEFVYSTPRNNIQGLLNCEEDAIFAVLGTIKHIVNNDNWFYTACACNKSVYPDSGMYFCEKCNKHVKNVSPRFSIKVRVMDDTDSATFVLFDHDAAMLFNKSCAEVLRSRDTRAAPTVLLAEIKALVNSTYLFKVECKAPVSHRFEPSFRVRKICTDMILINQFKSKWEHEESTFAKNANEMNSLSALHDTQIGSSANYLDTNNVEPLTAISTKETEIKLDCGKLGISQDLMPSFQEAVIDVDDIPNPKKIDAKGKAKMDNHTTKGKKASPNDETKTEDMNLPIKLLKRAIKIEKI 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02198 514 SUPERFAMILY Nucleic acid-binding proteins 65 157 IPR012340 -
Trre8g02198 514 Gene3D - 2 55 IPR012340 -
Trre8g02198 514 CDD RPA1_DBD_C 237 356 IPR047192 -
Trre8g02198 514 Gene3D - 223 381 IPR012340 -
Trre8g02198 514 MobiDBLite consensus disorder prediction 468 496 - -
Trre8g02198 514 Gene3D - 62 200 IPR012340 -
Trre8g02198 514 Pfam Replication factor-A C terminal domain 242 357 IPR013955 -
Trre8g02198 514 CDD RPA1_DBD_B_like 85 194 - -
Trre8g02198 514 SUPERFAMILY Nucleic acid-binding proteins 237 381 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02198 Trre-Chr8 17689058 17691646 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02198 7 353 Core DNA Replication Machinery Family AT5G08020 20.950 1.08e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02198 - - mtr:120579381 516.924