Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02197 ATGGCCAAATTCCGAGATGCATCCAAGACTCTAGTTAGAAAAACATTATTGTACAAGTTTGCAGAACATATCAAAGAGGGCATAGTCTATTCATTTGAAAATTTGGACTCTGCCACAAATGGTGGAACCTACAAAACTACCAAACATGAATACAAACTAACTTTTCAGTTTGGATCTAAAGTAACCCCACTTGGACCAAACAAACTCACCAACCTATCTCCTTTTAAATTTGTTCCTATTGGGGAAGTCATTAATGGCAGCTATGACAGCGATTACTTAGTTGATGTAATTGGAATGCTGACCGGAGTTGGGGAAGAAAGACAATATGAAGCCCGTGGACAAAGCACCAAACTCAATGTCATTGAACTTGAGGCTGATGGGGAAAAGATTCAGTGCACTCTTTTTGGTTCTTACGTTGATGAGCTCAACAATTTTCTTTCCTCCGGCGAAACACAAAATGCTGTTGTTATCATCATGCTTGGAAAGGTCAAACTATTTCAAGAGAAACTTCATATCCAAAATTGCCTCAATTGCACCAAAGTTTTTTACAATCCTGTCAATGATGATGTCACTTCCTTAAGGACTAGGATGGTTCAAAATCTTGACACACCATCTCCTCTCATCCTTACCCAAATCAATGCACAACTTAGAGTTGATCCTCTCCAAGAATTTGTCTATTCCACTCCTAGGAACAATATCCAAGGTCTTCTTAATTGTGAAGAGGATGCTATTTTTGCTGTTCTTGGTACTATCAAACACATTGTCAACAATGATAATTGGTTCTATACGGCATGTGCATGCAACAAAAGTGTGTATCCAGATTCGGGCATGTATTTTTGCGAAAAATGCAACAAGCATGTCAAAAATGTTTCACCAAGATTTTCCATCAAAGTTCGTGTTATGGATGATACCGATAGCGCCACATTTGTGCTTTTTGATCATGATGCTGCAATGTTGTTCAACAAATCATGTGCCGAAGTATTGCGCAGTCGTGACACCAGGGCTGCACCCACTGTTCTTCTTGCTGAAATTAAAGCATTGGTCAATTCCACATATCTATTCAAAGTTGAGTGCAAAGCTCCCGTGAGTCATAGGTTTGAGCCTTCTTTCCGTGTTCGCAAAATTTGCACCGACATGATTTTAATTAATCAATTCAAGTCCAAGTGGGAGCATGAAGAATCTACCTTTGCAAAAAATGCCAATGAAATGAATTCTTTGAGTGCATTGCATGATACTCAAATTGGATCTTCAGCAAACTATCTTGATACTAACAATGTTGAGCCACTAACAGCAATTTCTACAAAGGAGACAGAGATAAAATTGGATTGTGGAAAGTTGGGCATCTCACAAGACTTGATGCCATCATTCCAAGAAGCTGTCATTGATGTTGATGACATCCCAAATCCCAAAAAAATTGATGCAAAGGGCAAGGCAAAAATGGATAACCATACTACCAAAGGAAAGAAGGCTTCACCCAATGATGAAACCAAAACTGAAGACATGAACCTTCCAATTAAGCTTCTCAAAAGGGCAATTAAGATTGAAAAGATCTAA 1554 0.3861 MAKFRDASKTLVRKTLLYKFAEHIKEGIVYSFENLDSATNGGTYKTTKHEYKLTFQFGSKVTPLGPNKLTNLSPFKFVPIGEVINGSYDSDYLVDVIGMLTGVGEERQYEARGQSTKLNVIELEADGEKIQCTLFGSYVDELNNFLSSGETQNAVVIIMLGKVKLFQEKLHIQNCLNCTKVFYNPVNDDVTSLRTRMVQNLDTPSPLILTQINAQLRVDPLQEFVYSTPRNNIQGLLNCEEDAIFAVLGTIKHIVNNDNWFYTACACNKSVYPDSGMYFCEKCNKHVKNVSPRFSIKVRVMDDTDSATFVLFDHDAAMLFNKSCAEVLRSRDTRAAPTVLLAEIKALVNSTYLFKVECKAPVSHRFEPSFRVRKICTDMILINQFKSKWEHEESTFAKNANEMNSLSALHDTQIGSSANYLDTNNVEPLTAISTKETEIKLDCGKLGISQDLMPSFQEAVIDVDDIPNPKKIDAKGKAKMDNHTTKGKKASPNDETKTEDMNLPIKLLKRAIKIEKI 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02197 517 Pfam Domain of unknown function DUF223 9 93 IPR003871 -
Trre8g02197 517 Gene3D - 8 65 IPR012340 -
Trre8g02197 517 CDD RPA1_DBD_B_like 95 197 - -
Trre8g02197 517 Pfam Replication factor-A C terminal domain 245 360 IPR013955 -
Trre8g02197 517 CDD RPA1_DBD_C 240 359 IPR047192 -
Trre8g02197 517 SUPERFAMILY Nucleic acid-binding proteins 75 195 IPR012340 -
Trre8g02197 517 MobiDBLite consensus disorder prediction 471 499 - -
Trre8g02197 517 SUPERFAMILY Nucleic acid-binding proteins 240 384 IPR012340 -
Trre8g02197 517 Gene3D - 72 203 IPR012340 -
Trre8g02197 517 Gene3D - 226 384 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02197 Trre-Chr8 17689058 17691646 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02197 19 356 Core DNA Replication Machinery Family AT5G08020 21.408 2.33e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02197 - - mtr:120579381 523.857