Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02189 ATGTCGGGTGCGGGACCTATCTCTCAGGATTGGGAACCAGTCGTCATTCGCAAGAAAGCTCCCAACGCCGCCGCAAAGAAAGACGAGAAAGCCGTCAACGCTGCCCGCCGTGCCGGCGCCGATATCGATACCGTCAAGAAATATAATGCTGCCACAAACAAAGCTGCTTCTAGTAGCACTTCATTGAACACTAAGAGGCTGGATGAGGATACGGAGAATCTAGCTCATGATCGTGTACCAACTGAACTCAAGAAGGCTATAATGCAAGCTAGGATGGACAAAAAGCTTACTCAGTCTCAGCTTGCTCAAATCATCAATGAGAAGCCTCAAGTGATCCAAGAGTATGAGTCCGGGAAAGCTATTCCAAACCAGCAGATAATTGGCAAGTTGGAGAGAGCCCTTGGAGCTAAACTGCGTGGCAAGAAATGA 429 0.4872 MSGAGPISQDWEPVVIRKKAPNAAAKKDEKAVNAARRAGADIDTVKKYNAATNKAASSSTSLNTKRLDEDTENLAHDRVPTELKKAIMQARMDKKLTQSQLAQIINEKPQVIQEYESGKAIPNQQIIGKLERALGAKLRGKK 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02189 142 Pfam Helix-turn-helix 87 137 IPR001387 -
Trre8g02189 142 ProSiteProfiles Cro/C1-type HTH domain profile. 87 141 IPR001387 -
Trre8g02189 142 SMART mbf_short4 86 141 IPR001387 -
Trre8g02189 142 CDD HTH_XRE 85 135 IPR001387 -
Trre8g02189 142 FunFam Multiprotein bridging factor 1 71 142 - -
Trre8g02189 142 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 9 142 - -
Trre8g02189 142 MobiDBLite consensus disorder prediction 51 73 - -
Trre8g02189 142 Pfam Multiprotein bridging factor 1 9 79 IPR013729 -
Trre8g02189 142 Gene3D - 71 142 IPR010982 GO:0003677
Trre8g02189 142 SUPERFAMILY lambda repressor-like DNA-binding domains 80 138 IPR010982 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02189 Trre-Chr8 17632555 17634721 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Trre8g02189 MBF1 6.6e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02189 K03627 - atri:130817989 238.424