Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02188 ATGTTGGAGAATATGGAAAAGAACGTTGAAGCCATAGTTTTGAAGCATCAATATCCAAGAGAAACAATAACATTGGCAACGGAAACATTGTCAAATATGAGTCATCTTAGATTAATCATACTCAAGGATGTGCATTTTTCAGGAAGCCTGAGTTGTCTTTCAAATGAATTGAGATATGTTGACTGGCCTGGATATCCTTTCATGTATCTGCCTATAAGTTTTCAGCCCAATCAACTTGTTGAATTGATCTTGAAGCATAGCAGCATCAAACAACTATGGGAAGACAAGAAGTATCTGCCCAATTTGAGAACTATGAATCTGAAGCACTCCAAAAACCTAATCAAGATGCCAGATTTTGGAGAGGTTCCGAATCTTGAGTGGCTGAATCTCAAAGGATGTGTAAATCTTGTGCAGATGGATCCATCTATTGGTCTTCTGAGAAAGCTTGTTTTCTTGAAGTTGAAAGATTGCAAAAATCTAATAAACATACCCAACAACATATTTGATATTGGCTCTCTTAAATATCTAAATCTTTCCGGGTGTTCCAAAGTGTTTAACAATCCAAAGCATTCGAAGAAACTTGGTTCGAGAGAAAGTGAATTACATTCACAATCGATGTCCTCGGTGTTGAAATGGATCACGCTGCCTTTCCGTTCCTTGTATACTAAAGCAAACAAAGGATTAGGTAGTTGTTCGTTGTCATCCTTCCCTAGCTTTTCTTTTTTGCGGGAACTTGATATTAGTTTTTGTGGTCTAAGCCAAATCCCAGATGCAATTGGATGTATACGATGGTTAGGAAGATTGAACTTGTCGGGAAATAATTTTGTGACACTGCCTAGTCTTGGGGAGCTTTCTAAACTTGTATATTTAAACTTGCAGCACTGCAAGCAGTTGATACTTTTGCCTGAGCTCCCTTTGCCTGTTGCTATCAAGCAGGATCAAAATGGGAAGAGGGGAGGATTGTATATTTTTAACTGTCCTGAATTGGGGGAGAGAGAACATTGTAGTAGCATGACTTTTTCATGGATGATACAATTCGTTCAGGCGAACCAAGAATCCTCTGCCTGCTTTCCTTGGATTGATATTGTTATTCCCGGAAGTGAAATACCAAGATGGTTTAACAATCAGAGTGTAGGTAATTCAATTAGCATAGACCTATCTTCGATTGTGCATGACAATAATTTTATTGGCCTTGCTTGTTGTGTAGTATTTTCTGTGACATTTAATGATCCAACTATGACGGCAAATGAATGCGGACCTGAAGCATGGCTAGGTTTTGAATGTGGCAATACTAGTTGGGTTTTTGCTCATTGTCCCGTAATATTTGACAGAGATCTTATTACAGTTGAATCAAACCACACGTGGTTAATCTATTTCCCTCGTGAACCGCTCTTTGATTTTCTGAGCTCTATGAACATGACATTCAGGGATCTTGTTCATATCATAATGGTAACTCCCGTTGAGGACGGAGAAAGCTTTCATGTGGAGGTGAAGAAATGTGGATATCGTTGTGTATTTAAACAGGATCTACAACAGTTTAACTTAACAACGATGCACCACAGAAATTCGTTAGCTCAGAAACGCAAGTTTTTGGCAATTGAAGATTAG 1608 0.3843 MLENMEKNVEAIVLKHQYPRETITLATETLSNMSHLRLIILKDVHFSGSLSCLSNELRYVDWPGYPFMYLPISFQPNQLVELILKHSSIKQLWEDKKYLPNLRTMNLKHSKNLIKMPDFGEVPNLEWLNLKGCVNLVQMDPSIGLLRKLVFLKLKDCKNLINIPNNIFDIGSLKYLNLSGCSKVFNNPKHSKKLGSRESELHSQSMSSVLKWITLPFRSLYTKANKGLGSCSLSSFPSFSFLRELDISFCGLSQIPDAIGCIRWLGRLNLSGNNFVTLPSLGELSKLVYLNLQHCKQLILLPELPLPVAIKQDQNGKRGGLYIFNCPELGEREHCSSMTFSWMIQFVQANQESSACFPWIDIVIPGSEIPRWFNNQSVGNSISIDLSSIVHDNNFIGLACCVVFSVTFNDPTMTANECGPEAWLGFECGNTSWVFAHCPVIFDRDLITVESNHTWLIYFPREPLFDFLSSMNMTFRDLVHIIMVTPVEDGESFHVEVKKCGYRCVFKQDLQQFNLTTMHHRNSLAQKRKFLAIED 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02188 535 SUPERFAMILY L domain-like 24 334 - -
Trre8g02188 535 Gene3D Ribonuclease Inhibitor 14 211 IPR032675 -
Trre8g02188 535 Gene3D Ribonuclease Inhibitor 220 339 IPR032675 -
Trre8g02188 535 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 318 IPR044974 GO:0006952
Trre8g02188 535 ProSiteProfiles Leucine-rich repeat profile. 264 285 IPR001611 GO:0005515
Trre8g02188 535 Pfam C-JID domain 364 510 IPR045344 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02188 Trre-Chr8 17625948 17627798 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02188 28 302 WRKY Transcription Factor Family AT4G12020 33.893 2.14e-25 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02188 - - cam:105851141 538.11