Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02177 ATGCGTCCAATGAGGAGAATCAATTACAATGTAGGAGACAAAGTAGAAGTGTGCTGCAAAGAAGAAGGGTTTGTTGGATCATACTTCGAAGCGACAATTGTTTCGTGTCTCAATAGTGGAAAATATGTTGTTCGCTATAAGAACCTTCTCAAAGACGATGAGTCTGAACTTCTCACTGAGACATTCTTTCCAAAGGATCTTCGTCCACTACCGCCACAAGTTCGCAATCCTCCTTACTTCCAACTTAATCAAAAAGTGGATGTTTTTGATAAAGATGGTTGGTGGGTAGGGGAAATTGCAAGCGAGAAGATCCGCATGGAAAATACTTATTACTATAATGTGTATTTTGACTATTATCATGAATCCATTTACTACCCTTGTGATCAAATTAGGGTTCATCATGAGTTGTCGTTTAATGGAGAGTGGATCTTGGAAGCTTAA 441 0.3878 MRPMRRINYNVGDKVEVCCKEEGFVGSYFEATIVSCLNSGKYVVRYKNLLKDDESELLTETFFPKDLRPLPPQVRNPPYFQLNQKVDVFDKDGWWVGEIASEKIRMENTYYYNVYFDYYHESIYYPCDQIRVHHELSFNGEWILEA 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02177 146 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 9 143 - -
Trre8g02177 146 Pfam Agenet domain 12 72 IPR008395 -
Trre8g02177 146 SMART agenet_At_2 78 138 IPR014002 -
Trre8g02177 146 SMART agenet_At_2 7 75 IPR014002 -
Trre8g02177 146 CDD Tudor_Agenet_AtDUF_rpt1_3 11 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02177 Trre-Chr8 17469969 17470409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02177 21 106 PHD Transcription Factor Family AT5G58610 33.628 4.44e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02177 - - cam:101489110 189.889