Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02171 ATGGAAATGGAAGATTTTGACTGGAGTTATGATATACATGGAGATGCAAGTGTAACTGAGAGAAGAATGATTACAGATGGTTTTCAAGTAAACAACAATGATGAAATTGGAAGTGGGTATGGTTCATCTTTCTCTCTGGTTTTGGATAGGGAGAGAGGTGTGCTTGTGGAAGCACCAGCTAAAATTGCACAAAAGGGTGTGTCCACTGAGAGAAGTGTTGAAGCTTTGAAGAATCATAGTGAGGCAGAGAGAAGGAGAAGAGCTAGGATTAATGCACATCTTGATACACTTCGTAGTGTGATTCCAGGTGCTTTGAAGATGGACAAAGCATCATTACTTGGTGAAGTTATTAGACATTTGAAAGAGCTAAAAAGAAATGCAACACAAGCAAGTGAAGGATTAATAATACCAAATGACAATGATGAAATAAGTGTTGAGGAACAAGAGTGTGGACTAAATGGTTTTCCATATTCAATTAAAGCATCACTATGTTGTGAATATCAACCAGGGATATTGTCTAATATAAGACAAGCACTAGATGCTCTTCATCTCATAATCATGAAGGCAGATATTGCAACTTTTGGAGGCAGAATGAAAAATGTATTTGTTGTAATTAGCTGTGAGGAACATAATTTTGATGCTGCTGAATATAGACAGTTTCTTGCTGGTTCTGTTCACCAAGCTTTAAAGTCTGTGCTCAATAGATTTACTGTTTCACAAGATATGTTAGGAGCTAGAAAAAGAAGGAGGATTTCTATATTTAGTTCATCTTTAGAAGATTTCCTATAA 789 0.3612 MEMEDFDWSYDIHGDASVTERRMITDGFQVNNNDEIGSGYGSSFSLVLDRERGVLVEAPAKIAQKGVSTERSVEALKNHSEAERRRRARINAHLDTLRSVIPGALKMDKASLLGEVIRHLKELKRNATQASEGLIIPNDNDEISVEEQECGLNGFPYSIKASLCCEYQPGILSNIRQALDALHLIIMKADIATFGGRMKNVFVVISCEEHNFDAAEYRQFLAGSVHQALKSVLNRFTVSQDMLGARKRRRISIFSSSLEDFL 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02171 262 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 78 129 IPR036638 GO:0046983
Trre8g02171 262 Pfam Helix-loop-helix DNA-binding domain 78 123 IPR011598 GO:0046983
Trre8g02171 262 PANTHER TRANSCRIPTION FACTOR BHLH30 59 254 IPR045847 GO:0003700|GO:0006355
Trre8g02171 262 SMART finulus 80 129 IPR011598 GO:0046983
Trre8g02171 262 CDD ACT_UUR-ACR-like 162 233 - -
Trre8g02171 262 Gene3D - 69 132 IPR036638 GO:0046983
Trre8g02171 262 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 74 123 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02171 Trre-Chr8 17427319 17429017 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02171 60 252 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 42.132 1.74e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre8g02171 HLH 1.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02171 - - aprc:113859663 380.948