Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02170 ATGTCTCATCGGAAATTCGAGCACCCTAGGCACGGTTCTCTCGGCTTTCTCCCAAGGAAGCGAGCTTCACGTCATCGCGGAAAAGTGAAAGCCTTTCCAAAGGACGATCCCACCAAACCATGCAGGTTGACTGCTTTTGTTGGCTATAAGTCTGGGATGACCCATATAGTTAGGGAGGTTGAGAAACCTGGATCAAAGCTTCATAAGAAAGAGACATGTGAAGCAGTCACTATCATCGAAACTCCTCCAGTTGTTGTTGTTGGAGTGGTGGGATATGTGAAGACACCACGAGGCCTTCGCACACTGAATACTGTTTGGGCTCAACATCTTAGTGAAGATATCAAGCGAAAGAAAGATATTCAATCTCAGCTCGAGAAATTGAAAAAGTATGCCACTGTCATTCGTGTTCTTGCTCATACCCAGGTAAGGAAGTTGAAGGGTCTAAAACAAAAGAAAGCTCATTTGATGGAGATCCAAGTTAATGGTGGAACAGTAAGCCAGAAAGTGGACTATGCATACAGTTTTTTTGAAAAGCAAATCCCTGTTGATGCTGTTTTTCAAAAGGATGAGATGATAGATATCATTGGAGTGACTAAAGGTAAAGGTTATGAAGGTGTTGTAACTCGTTGGGGTGTCACTCGCCTTCCAAGAAAGACACACAGAGGTCTAAGGAAGGTTGCTTGTATTGGTGCCTGGCACCCTGCACGTGTTTCTTTCACAGTTGCCAGGGCTGGGCAAAATGGATATCATCATCGTACTGAGTTGAATAAGAAGATCTACAAGGTTGGCAAGACCGACCAAGAGTCACATACAGCCATCACTGAATTTGACAGGACTGAGAAGGATATTACTCCTATGGGTGGATTCCCTCATTATGGTATTGTGAAACACGATTATCTTATGATCAAGGGATGCTGCGTTGGACCAAAGAAGAGGGTTGTCACTCTTCGTCAGTCACTGCTCAAGCAGACATCTCGATTGGCTCTTGAAGAGATCAAACTGAAGTTCATTGACACCTCCTCCAAGTTTGGACATGGCCGCTTCCAGACTACCCAGGAGAAACAGAAGTTTTATGGTCGGTTGAAGGCGTGA 1092 0.446 MSHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCRLTAFVGYKSGMTHIVREVEKPGSKLHKKETCEAVTIIETPPVVVVGVVGYVKTPRGLRTLNTVWAQHLSEDIKRKKDIQSQLEKLKKYATVIRVLAHTQVRKLKGLKQKKAHLMEIQVNGGTVSQKVDYAYSFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYKVGKTDQESHTAITEFDRTEKDITPMGGFPHYGIVKHDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKQKFYGRLKA 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02170 363 Gene3D Ribosomal protein L3, domain 3 1 87 IPR044892 -
Trre8g02170 363 Pfam Ribosomal protein L3 117 344 IPR000597 GO:0003735|GO:0005840|GO:0006412
Trre8g02170 363 ProSitePatterns Ribosomal protein L3 signature. 186 209 IPR019926 -
Trre8g02170 363 FunFam 60S ribosomal protein L3 1 79 - -
Trre8g02170 363 Gene3D Translation factors 226 363 - -
Trre8g02170 363 FunFam Ribosomal protein L3 239 363 - -
Trre8g02170 363 FunFam 60S ribosomal protein L3 44 132 - -
Trre8g02170 363 SUPERFAMILY Translation proteins 4 344 IPR009000 -
Trre8g02170 363 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 1 358 IPR045077 GO:0003735|GO:0005840|GO:0006412
Trre8g02170 363 FunFam 60S ribosomal protein L3 200 248 - -
Trre8g02170 363 Gene3D - 88 119 - -
Trre8g02170 363 Gene3D - 120 180 - -
Trre8g02170 363 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02170 Trre-Chr8 17421252 17424998 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02170 1 361 Cytoplasmic Ribosomal Protein Gene Family AT1G43170 81.654 0.0 643