Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02161 ATGGCTCAATTGCCACCAAAAGTTCCAATTCCAAACATGACACCAAATTGGCCTGAATTTTCTTCACACCAAAAATTACCTACACTTAAAACCTTATTGTCACCAAATGCTTCAAACTTTCAAAACAATCAACAAAATCCTTCATGGGTGGACGAGTTTCTGGACTTCTCGTCTGCCAGACGAGGAGTCCACAGGCGGTCCGCGAGTGACTCCGTGACTTTCATAGAGACATCAATGATGGAACATTGTCGCCGTAGAGACGGTGACAATGATTTTGAAAGATTTGATGATGAACAATTGATGTCTATGTTTGGTGTTGATGAGGTTTCGGCGAAAAATATGATGCCGCCGCCACCAGCGACAGGTGCATTGTCTTCTAACTCCAACCCTTCAACTCCTTCTGATCATAATAGCATCAATGATGACAAAGAAGAAGGAGAAGAGGAGGAAAAGCAGCAACCATTGAAGCATGAATTGGATGAAGATGAAATTAGTGAAGGCAAACAAGAAAATGCACGAATTGTCAATGATGATGATGATAATGATGATGACAACAATGCAAATAGAACAACTTTTTCAAGTCAGAAAATTACTGACCCCAAGAGGGTAAAAAGAATCTTGGCAAATAGACAATCAGCACAAAGATCAAGAGTGAGGAAGTTACAATACATATCAGAACTTGAACGAAGTGTGTCTTCATTACAGGCTGAAGTATCAGTATTGTCACCAAGAGTTGCATATTTGGATCATCAGAGATTGCTTCTAAATGTTGATAACAGTGCTCTCAAGCAAAGAATCGCAGCACTTGCACAAGACAAAATATTCAAAGATGCTCATCAAGAAGCATTGAAGAGGGAGATAGAGAGGCTGAGGCAAGTTTATCACCAACAAAACAACATCAAGAGTAATAATAATAATGCTACAGTAGTATCATCACAATCTCGATCTCCATCATCTAAACCACGTTGTGATAATGATACTCACATTGAAAATGAACATCTTATCAATGTTTGA 1014 0.3895 MAQLPPKVPIPNMTPNWPEFSSHQKLPTLKTLLSPNASNFQNNQQNPSWVDEFLDFSSARRGVHRRSASDSVTFIETSMMEHCRRRDGDNDFERFDDEQLMSMFGVDEVSAKNMMPPPPATGALSSNSNPSTPSDHNSINDDKEEGEEEEKQQPLKHELDEDEISEGKQENARIVNDDDDNDDDNNANRTTFSSQKITDPKRVKRILANRQSAQRSRVRKLQYISELERSVSSLQAEVSVLSPRVAYLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIERLRQVYHQQNNIKSNNNNATVVSSQSRSPSSKPRCDNDTHIENEHLINV 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02161 337 SMART brlzneu 197 261 IPR004827 GO:0003700|GO:0006355
Trre8g02161 337 MobiDBLite consensus disorder prediction 110 198 - -
Trre8g02161 337 PANTHER BASIC LEUCINE ZIPPER 34 1 317 - -
Trre8g02161 337 MobiDBLite consensus disorder prediction 1 22 - -
Trre8g02161 337 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 204 219 IPR004827 GO:0003700|GO:0006355
Trre8g02161 337 SUPERFAMILY Leucine zipper domain 201 255 IPR046347 GO:0003700|GO:0006355
Trre8g02161 337 MobiDBLite consensus disorder prediction 149 175 - -
Trre8g02161 337 CDD bZIP_plant_RF2 202 252 IPR044759 GO:0003700|GO:0006355
Trre8g02161 337 Coils Coil 280 300 - -
Trre8g02161 337 Gene3D - 200 299 - -
Trre8g02161 337 MobiDBLite consensus disorder prediction 321 337 - -
Trre8g02161 337 MobiDBLite consensus disorder prediction 120 136 - -
Trre8g02161 337 MobiDBLite consensus disorder prediction 297 320 - -
Trre8g02161 337 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 199 251 IPR004827 GO:0003700|GO:0006355
Trre8g02161 337 FunFam Basic leucine zipper 61 200 273 - -
Trre8g02161 337 Pfam bZIP transcription factor 201 245 IPR004827 GO:0003700|GO:0006355
Trre8g02161 337 MobiDBLite consensus disorder prediction 297 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02161 Trre-Chr8 17312298 17315121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02161 1 278 bZIP Transcription Factor Family AT3G58120 53.608 1.71e-85 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre8g02161 bZIP_1 2.1e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02161 - - gmx:100101873 379.407