Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02156 ATGCAGAAATATCGGAACAGAACAGTCTCGAGAGTTTCGTTTCTTGTTTTGGAAGACAATAACAATTTCCTGAGGATGCAAAGAAATAGTAACAACAATGGTATGCATCAAGCATGTGCAGCATGCAAACATCAAAGAAAAAAATGTAGTGAAAATTGCATATTAGCACCTTATTTTCCATCAAACAGAAGTAAAGAATTCAAAGCAGCGCACAAAGTTTTTGGTGTTAGCAACATAACAAAGTTGGTAAGAAATGCTCAAGAAGTAGATAGAAGAAGAGTTGTGGATTCATTGATATGGGAAGCAATTAATAGACAAAAGGATCCTATTGATGGTTCTTATGGAGAGTATATCAAAGTATGCAATGAGTATAAAAAAATATTTGAAGAACTTAAGATGTTTAGAGAACACCAAAATCAATTGTTGCAAATGCCACCTCATCATGAGAATAAGAATGGTATTATGGATTCTACTACAATTTATAATACATATTGTTCAAATTATTTACAAGATCTTGAGAGTTTGAGGACAGAAGTTGTCATCCCAATTCAGCAGCACTCACAGTCATACTATATTGCAGGTGATGAATTCAACCGGTGA 600 0.3367 MQKYRNRTVSRVSFLVLEDNNNFLRMQRNSNNNGMHQACAACKHQRKKCSENCILAPYFPSNRSKEFKAAHKVFGVSNITKLVRNAQEVDRRRVVDSLIWEAINRQKDPIDGSYGEYIKVCNEYKKIFEELKMFREHQNQLLQMPPHHENKNGIMDSTTIYNTYCSNYLQDLESLRTEVVIPIQQHSQSYYIAGDEFNR 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02156 199 ProSiteProfiles LOB domain profile. 37 138 IPR004883 -
Trre8g02156 199 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 37 152 - -
Trre8g02156 199 Pfam Lateral organ boundaries (LOB) domain 38 134 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02156 Trre-Chr8 17281116 17283991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02156 36 135 AS2 family AT1G06280 60.000 1.26e-41 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre8g02156 LOB 3.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02156 - - mtr:112420889 290.041