Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02155 ATGGCGGTTCCTTTTCTTCTCCGTTCTCTTTACTCTTCCACCAAAAAATCCTTTTCTTCTTCATCTTCTTCACCTCTCTCTTCATCTCCTTATCGTTTCTTCTCCCGCGCTTTCTCTTCCGCTCCCGCCGTCGCCACCAACCCAACCGTATCTCCCGACCCCAGCCGCCTCCGCAACGTCGCCGTCATCGCTCATGTTGATCACGGCAAGACAACTCTCATGGACCGACTTCTCCGTCAGTGCGGTGCTGATATCCCTCACGAACGCGCCATGGATTCCATTAACCTTGAAATTGAACGCGGCATCACAATCTCTTCCAAGGTTACTTCTGTTTTGTGGAAAGAAAATGAGCTCAACTTGGTGGATACTCCTGGACACGCTGATTTTGGCGGTGAGGTTGAACGTGTAGTTGGTATGGTTGAGGGAGCAGTTTTGGTTGTTGATGCTGGGGAAGGTCCACTTGCCCAAACTAAGTTTGTTCTTGCGAAAGCCTTAAAGTATGGGTTGCGGCCTATTCTCCTTTTAAACAAAGTAGATCGTCCATCAGTTACCGAGGAGATGTGCGATGAAGTTGAGAGTCTGGTGTTTGATCTATTTGCCAACCTGGGTGCTACAGAGGAACAACTTGACTTCCCAGTTCTTTATGCTTCTGCTAAAGAAGGATGGGCATCCACCACCTATACCAAGGATCCTCCTGCCGAGGCCAAAAATATGTCACAGTTGCTTGATGCCATTGTATCACATGTCCTTCCACCAAATGCAAATATTGATGCCCCTTTCCAAATGCTGGTTTCAATGATGGAGCGGGACTCTTATCTTGGGCGGATTTTGACTGGTCGTGTGTATTCCGGGGTTGTTCGTGTTGGTGACAGGGTTCACGGACTACGTAACAATGATTCTGGTGCTGAAAAAATTGAAGATGGAAAGGTGGTGAAAGTAATGAAAAGGAGGGGTACATCCATGATTGTAACTGATTGTGCTGGAGCTGGCGATATAGTGTCAATTGCTGGTTTGTCAAGTCCATCAATCGGCCATACAGTCACTACTGTGGAGATTATGTCTGCATTACCCACAGTTGAATTGGACCCCCCAACAATTTCTATGACCTTTGGTGTAAATGACTCCCCATTAGCTGGTCGTGATGGCACTCATTTAACTGGGGGAAAAATTGGTGATCGACTAATTGCTGAAGCTGAAACCAACCTTGCCTTAAATGTGCTTCCAGGCATGTCAGAGACATTTGAAGTTCAAGGAAGAGGAGAACTACAGCTGGGTATTTTAATTGAGAATATGAGGCGTGAGGGATTTGAGCTATCTGTCTCTCCACCTAAAGTCATGTATAAAACTGACAATGGTCAGAAACTTGAGCCAATAGAAGAAGTTACAATTGAGGTAAATGATGAGCACGTTGGCTTTGTAATGGAGGCCTTGTCTCACAGACGAGCTGAGATTACTGACATGGGTCCTGTCGCGGGAGCTGTTGGTCGAACTAAATTGTGTTTGACTTGTCCATCAAGGGGCCTGGTTGGTTACAGGAGTGTGTTCAGCAGTGAGACACGTGGAACTGGGTTCATGCACCGTGCTTTCCTCACATATGAAAAATTTCGAGGCCCTCTTGGCAATGTGAGGAAAGGAGTACTGGTATCAGTGGGTTATGGTCCAATCACAGCTCATGCATTAATGAGCTTAGAAGCTCGTGGGACTCTTTTTGTATCTCCTGGAATGGAGACATATGATGGAATGATTGTTGGAGAACATTCACGGGATACAGATCTTGATGTTAATCCAGTGAGGGCTAAAAAACTTACAAATATACGTTCTGCTTCCAATGATGAGAATGTGAAGCTGACTCCTCCTCGCCTTATGACGCTTGAAGAAGCTATAGGGTATGTAGCTTCGGACGAGCTTATCGAGGTTACTCCAAAGACCATCCGGTTACGAAAGAAATACCTTGATGCTAACAAGCGTAAAACCATGAGTAAAAGGCAAAAGGAATGA 1998 0.4585 MAVPFLLRSLYSSTKKSFSSSSSSPLSSSPYRFFSRAFSSAPAVATNPTVSPDPSRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSINLEIERGITISSKVTSVLWKENELNLVDTPGHADFGGEVERVVGMVEGAVLVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPSVTEEMCDEVESLVFDLFANLGATEEQLDFPVLYASAKEGWASTTYTKDPPAEAKNMSQLLDAIVSHVLPPNANIDAPFQMLVSMMERDSYLGRILTGRVYSGVVRVGDRVHGLRNNDSGAEKIEDGKVVKVMKRRGTSMIVTDCAGAGDIVSIAGLSSPSIGHTVTTVEIMSALPTVELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGDRLIAEAETNLALNVLPGMSETFEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTDNGQKLEPIEEVTIEVNDEHVGFVMEALSHRRAEITDMGPVAGAVGRTKLCLTCPSRGLVGYRSVFSSETRGTGFMHRAFLTYEKFRGPLGNVRKGVLVSVGYGPITAHALMSLEARGTLFVSPGMETYDGMIVGEHSRDTDLDVNPVRAKKLTNIRSASNDENVKLTPPRLMTLEEAIGYVASDELIEVTPKTIRLRKKYLDANKRKTMSKRQKE 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02155 665 CDD TypA_BipA 57 252 IPR047041 -
Trre8g02155 665 NCBIfam small GTP-binding protein domain 58 196 IPR005225 GO:0005525
Trre8g02155 665 FunFam GTP-binding protein TypA 56 253 - -
Trre8g02155 665 Pfam Elongation factor G C-terminus 454 537 IPR000640 -
Trre8g02155 665 SUPERFAMILY Translation proteins 202 357 IPR009000 -
Trre8g02155 665 CDD BipA_TypA_C 456 536 IPR035651 -
Trre8g02155 665 Gene3D Elongation Factor G (Translational Gtpase), domain 3 365 649 - -
Trre8g02155 665 Gene3D bipa protein 542 657 IPR042116 -
Trre8g02155 665 FunFam GTP-binding protein TypA 542 628 - -
Trre8g02155 665 CDD BipA_TypA_II 260 357 IPR047042 -
Trre8g02155 665 Gene3D - 55 253 IPR027417 -
Trre8g02155 665 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 55 253 IPR000795 GO:0003924|GO:0005525
Trre8g02155 665 SUPERFAMILY EF-G C-terminal domain-like 362 445 IPR035647 -
Trre8g02155 665 SUPERFAMILY EF-G C-terminal domain-like 456 572 IPR035647 -
Trre8g02155 665 FunFam Elongation factor family protein 254 358 - -
Trre8g02155 665 PRINTS GTP-binding elongation factor signature 119 129 IPR000795 GO:0003924|GO:0005525
Trre8g02155 665 PRINTS GTP-binding elongation factor signature 59 72 IPR000795 GO:0003924|GO:0005525
Trre8g02155 665 PRINTS GTP-binding elongation factor signature 99 107 IPR000795 GO:0003924|GO:0005525
Trre8g02155 665 PRINTS GTP-binding elongation factor signature 135 146 IPR000795 GO:0003924|GO:0005525
Trre8g02155 665 PRINTS GTP-binding elongation factor signature 171 180 IPR000795 GO:0003924|GO:0005525
Trre8g02155 665 FunFam GTP-binding protein TypA 365 472 - -
Trre8g02155 665 FunFam GTP-binding protein TypA 447 541 - -
Trre8g02155 665 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 53 227 - -
Trre8g02155 665 Gene3D - 447 541 - -
Trre8g02155 665 Pfam Elongation factor Tu GTP binding domain 56 249 IPR000795 GO:0003924|GO:0005525
Trre8g02155 665 Gene3D Translation factors 254 358 - -
Trre8g02155 665 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 52 262 IPR027417 -
Trre8g02155 665 Pfam Elongation factor Tu domain 2 274 348 IPR004161 GO:0005525
Trre8g02155 665 CDD BipA_III 364 441 IPR047043 -
Trre8g02155 665 NCBIfam translational GTPase TypA/BipA 57 657 IPR006298 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02155 Trre-Chr8 17264760 17275592 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02155 56 180 Eukaryotic Initiation Factors Gene Family AT3G22980 43.511 3.24e-25 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02155 K06207 - gmx:100782425 1126.69