Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02143 ATGGGATCCCAAAGTGAAGACAATATTGAAAAGCTGCTTCAAGCTCAAACCAAAGTATTCAATCACATTTTCAGTTTCATAAACTCAATGTCCCTTAAATGTGCAATTGAATTGTCCATACCAGATATCATACAAAACTATGGTAAACCCATCCCACTCTCACAACTCATTGCTAAATTACCAATTCACCCTTCAAAAACCGGCGACATTTATCGTTTAATGAGAGTTTTAACACATTCCGGTTTCTTCAATGTCACTAAAAATGATCTAGAAGTAATGTATGAGCTTAATGATGCATCTAGATTATTACTTAAGGACCATCCCTATAGTATGATATCTATGTTACATGTTATACTTGGTCCAATTATGAGTAAACCATGGTATCAACTTTCTAATTGGTACAAAAATGATGACCCTTCACCTTTTCACACCGAAAATAATGGGATTGCTTTGTGGGATTTTGCTGACCATGACCCTAAATTCAATCATTTGTTTAATGAAGCTATGGCTTGTGAAACTAGAATGGCTTCTAGTGTTATTATGATGGGGAAGTTTAAAGGTGCGTTTGAGGGATTGGAATCATTGGTTGATGTTGGTGGAGGCATAGGGACAATTACTAAGGTTATTGCTAAGTCATTTCCAAATATTGAATGCATTGTGTTTGATCTCCCACATGTTGTTGATGGCTTGCAAGGAAGTGAAAACTTGAAATATGTTGGAGGTGACATGTTTGAGGCTATTCCTCCTACTCAATCAATTTTACTCAAGGGTGTATTACATGACTGGAACGATGAGGAATGTTTGAAAATTCTAAAGAAATGCAAGGAAGCAATAAGGAACAAAGGAAAAGAAGGGAAAGTGATAGTCATAGATGCAGTGGTGGGGAATGAGAATGAAGACAAAGAAACATATGAAGCACAAGTATTCTATGATTTGGAGATGATGGTGTTGGTGAATGGAAAAGAGAGAAATGAGAAAGAATGGTCTAAGTTGTTTTTCTCTGCTGGTTTTAGTAACTACAAGATAACTCATGGTCTTGGTTTTAAGTCCCTCATTGAGGTTTTCCCTTGGTAG 1074 0.3631 MGSQSEDNIEKLLQAQTKVFNHIFSFINSMSLKCAIELSIPDIIQNYGKPIPLSQLIAKLPIHPSKTGDIYRLMRVLTHSGFFNVTKNDLEVMYELNDASRLLLKDHPYSMISMLHVILGPIMSKPWYQLSNWYKNDDPSPFHTENNGIALWDFADHDPKFNHLFNEAMACETRMASSVIMMGKFKGAFEGLESLVDVGGGIGTITKVIAKSFPNIECIVFDLPHVVDGLQGSENLKYVGGDMFEAIPPTQSILLKGVLHDWNDEECLKILKKCKEAIRNKGKEGKVIVIDAVVGNENEDKETYEAQVFYDLEMMVLVNGKERNEKEWSKLFFSAGFSNYKITHGLGFKSLIEVFPW 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02143 357 CDD AdoMet_MTases 195 295 - -
Trre8g02143 357 PIRSF O-mtase 1 357 IPR016461 GO:0008168
Trre8g02143 357 PANTHER O-METHYLTRANSFERASE 13 341 IPR016461 GO:0008168
Trre8g02143 357 SUPERFAMILY "Winged helix" DNA-binding domain 10 108 IPR036390 -
Trre8g02143 357 FunFam O-methyltransferase ZRP4 105 356 - -
Trre8g02143 357 Gene3D - 2 103 IPR036388 -
Trre8g02143 357 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 356 IPR016461 GO:0008168
Trre8g02143 357 FunFam Coniferyl alcohol 9-O-methyltransferase 3 103 - -
Trre8g02143 357 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Trre8g02143 357 Gene3D Vaccinia Virus protein VP39 104 356 IPR029063 -
Trre8g02143 357 Pfam O-methyltransferase domain 127 338 IPR001077 GO:0008171
Trre8g02143 357 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 108 354 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02143 Trre-Chr8 17176367 17177714 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02143 30 355 Monolignol Biosynthesis Gene Families AT5G54160 33.134 5.66e-50 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02143 - K16040 gmx:100793263 461.455