Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02140 ATGGGATCCCAAAGTGAAGAAAATATTGAAAAGCTGCTTCAAGCTCAAACCAAAGTATTCAATCACATTTTCAGTTTCATAAACTCAATGTCCCTTAAATGTGCAATTGAATTGTCCATACCAGATATCATACAAAACTATGGTAAACCCATCCCACTCTCACAACTCATTGCTAAATTACCAATTCACCCTTCAAAAACCGGCGACATTTATCGTTTAATGAGAGTTTTAACACATTCCGGTTTCTTCAATGTCACTAAAAATGATCTAGAAGTAATGTATGAGCTTAATGATGCATCTAGATTATTACTTAAGGACCATCCCTATAGTATGATATCTATGTTACATGTTATACTTGGTCCAATTATGAGTAAACCATGGTATCAACTTTCTAATTGGTACAAAAATGATGACCCTTCACCTTTTCACACCGAAAATAATGGGATTGCTCTGTGGGATTTTGCTGGCCATGACCCTAAATTCAATCATTTGTTTAATGAAGCTATGGCTTGTGAAACTAGAATGGCTTCTAGTGTTATTATGATGGGGAAGTTTAAAGGTGTGTTTGAGGGATTGGAATCATTGGTTGATGTTGGTGGAGGCATAGGGACAATTGCTAAGGTTATTGCGAAGTCATTCCCAAAGATTGAATGCATTGTGTTTGATCTCCCACATGTTGTTGATGGCTTGCAAGGAAGTGAAAACTTGAAATATGTTGGAGGTGACATGTTTGAGGTTATTCCTCCTGCCCAATCAATTTTACTCAAGTGGGTATTACATGACTGGAACGATGCGGAATGTTTGAAAATTCTAAAAAAATGCAATGAAGCAATAAAGAGCAAAGGAAATGAAGGAAAAGTGATAATCATAGACGCGGTGGTGGCAAATGAGAAGGAAGACAAAGAAACATATGAAGCACAATTGTTCTTTGATTTGGAGATGATGGTATTGGTGAATGGAAAAGAGAGAAATGAGAAAGAATGGTCTAAGTTGTTTTTCTCTGCTGGTTTTAGTAACTACAAGATAACTCATGGTCTTGGTTTTAAGTCTCTCATTGAGGTTTTTCTTTAG 1071 0.3623 MGSQSEENIEKLLQAQTKVFNHIFSFINSMSLKCAIELSIPDIIQNYGKPIPLSQLIAKLPIHPSKTGDIYRLMRVLTHSGFFNVTKNDLEVMYELNDASRLLLKDHPYSMISMLHVILGPIMSKPWYQLSNWYKNDDPSPFHTENNGIALWDFAGHDPKFNHLFNEAMACETRMASSVIMMGKFKGVFEGLESLVDVGGGIGTIAKVIAKSFPKIECIVFDLPHVVDGLQGSENLKYVGGDMFEVIPPAQSILLKWVLHDWNDAECLKILKKCNEAIKSKGNEGKVIIIDAVVANEKEDKETYEAQLFFDLEMMVLVNGKERNEKEWSKLFFSAGFSNYKITHGLGFKSLIEVFL 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02140 356 Pfam O-methyltransferase domain 127 338 IPR001077 GO:0008171
Trre8g02140 356 PANTHER O-METHYLTRANSFERASE 13 341 IPR016461 GO:0008168
Trre8g02140 356 Gene3D Vaccinia Virus protein VP39 104 355 IPR029063 -
Trre8g02140 356 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Trre8g02140 356 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 356 IPR016461 GO:0008168
Trre8g02140 356 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 108 354 IPR029063 -
Trre8g02140 356 Gene3D - 2 103 IPR036388 -
Trre8g02140 356 FunFam Coniferyl alcohol 9-O-methyltransferase 2 103 - -
Trre8g02140 356 SUPERFAMILY "Winged helix" DNA-binding domain 10 108 IPR036390 -
Trre8g02140 356 PIRSF O-mtase 1 356 IPR016461 GO:0008168
Trre8g02140 356 FunFam O-methyltransferase ZRP4 105 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02140 Trre-Chr8 17153219 17158838 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02140 30 355 Monolignol Biosynthesis Gene Families AT5G54160 32.036 9.04e-51 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02140 - K16040 gmx:100807238 481.485