Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02125 ATGGATGAAGTAGAAATCACAAATGGTAATAATTTCCCTCAAAATCCAACAATTAGTGCTTCTAATAACCCTCCTACTTTGAAGAGAAAAAGAAACCTCCCAGGAAATCCAGATCCTGAAGCAGAAGTTATAGCTTTATCACCAAAGACACTTATGGCTACAAACAGATTCTTGTGTGAAACATGTGGGAAAGGTTTTCAAAGAGATCAAAATCTACAACTCCATAGACGCGGACATAATCTTCCATGGAAGCTTAAGCAGAGAACAAATAAAGAAATAAAGAAGAGAGTTTATGTTTGTCCAGAGAAGAGTTGTGTTCATCATGATCCTTCAAGGGCACTTGGTGACTTAACTGGGATAAAAAAGCACTTTTGTAGAAAGCATGGTGAAAAGAAGTGGAAGTGTGAGAAGTGCTCAAAACGTTATGCTGTTCAGTCAGATTGGAAAGCTCACTCAAAAATATGTGGTACTAGAGAATACAAATGTGACTGTGGAACTATCTTTTCAAGGAGAGATAGCTTCATAACTCATAGAGCCTTCTGTGATGCATTAGCAGAAGAAACAGCAAGAGTAAGTGCAGCATCAGAAATAAACAACAATTCATTATTAAGGGATAATATTGGTAATTACAACATAATGGGAACAACAACATCCTTAGTTCCTAACAACAACATGCCAAATCATTTTTCATCAATTTTCAAACAAATTTCAACTTCTCATAAATCAACCAATCAAACAAGAGGACTCTCTCTTTGGATGAATCAAAATCAAACATCTCATAATTCTCAACCTCATGAAACCAATGGTAATAATTTGCATGAGATTCATCATCATCAACAACAACAACTTGACACATCATCAAGAGGATTATTATATGGTGTGAATGATAATCATAATCCAAACACAAATAATTATCAGCTTAATTGGGTTTATGGAAATAAACTTTCCACTAATTGCAACCAAGATTTAATTACTAGTACTACAACTTCACTTCCACTAGGAAACATTAATGTTAATGTTAAGGATGATGTTACAAACCAACAAATTTGTTCTTCATTGTATAGCTCACAACATCAAATACAATCAAATCAAACATCATCAGCAAACATGTCAGCTACAGCTTTGTTACAAAAAGCTGCTCAAATTGGATCAACATCAAGTGATACATCATTCCTTGGAAGTTTAGGTTTGAAATGCAGTAATAATAATAACATTATTACTAATGATGTGAATAAGTTTGGTAGTAATTCTGGTATGTATGGTACTACAAGTTCATTACTCATTAGTCTTGGAAATGAAGAAGATCATAACACTGCATGTGATTTTACACAAATGCACCCTTCTAAACGTAGACATGTGCAAAGTGATGAGAATGGTGGTGGAGGGCAAACTAGGGATTTTCTTGGTGTTGGTGTGCAAACCATTTGTCATCCTTCATCAATCAATGGATGGATTTGA 1458 0.3443 MDEVEITNGNNFPQNPTISASNNPPTLKRKRNLPGNPDPEAEVIALSPKTLMATNRFLCETCGKGFQRDQNLQLHRRGHNLPWKLKQRTNKEIKKRVYVCPEKSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVSAASEINNNSLLRDNIGNYNIMGTTTSLVPNNNMPNHFSSIFKQISTSHKSTNQTRGLSLWMNQNQTSHNSQPHETNGNNLHEIHHHQQQQLDTSSRGLLYGVNDNHNPNTNNYQLNWVYGNKLSTNCNQDLITSTTTSLPLGNINVNVKDDVTNQQICSSLYSSQHQIQSNQTSSANMSATALLQKAAQIGSTSSDTSFLGSLGLKCSNNNNIITNDVNKFGSNSGMYGTTSSLLISLGNEEDHNTACDFTQMHPSKRRHVQSDENGGGGQTRDFLGVGVQTICHPSSINGWI 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02125 485 FunFam protein indeterminate-domain 12-like 36 104 - -
Trre8g02125 485 Gene3D Classic Zinc Finger 126 193 - -
Trre8g02125 485 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Trre8g02125 485 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Trre8g02125 485 Gene3D Classic Zinc Finger 36 109 - -
Trre8g02125 485 MobiDBLite consensus disorder prediction 7 29 - -
Trre8g02125 485 SUPERFAMILY beta-beta-alpha zinc fingers 56 153 IPR036236 -
Trre8g02125 485 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 17 473 IPR031140 -
Trre8g02125 485 FunFam protein indeterminate-domain 5, chloroplastic-like 111 190 - -
Trre8g02125 485 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02125 Trre-Chr8 17047130 17049772 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02125 21 485 IDZ Gene Family AT1G03840 53.200 4.95e-147 428
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre8g02125 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02125 K25870 - gmx:100790620 591.267