Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02124 ATGCTAAAAAAAATGGATGAAGTAGAAATCACAAATGGTAATAATTTCCCTCAAAATCCAACAATTAGTGCTTCTAATAACCCTCCTACTTTGAAGAGAAAAAGAAACCTCCCAGGAAATCCAGATCCTGAAGCAGAAGTTATAGCTTTATCACCAAAGACACTTATGGCTACAAACAGATTCTTGTGTGAAACATGTGGGAAAGGTTTTCAAAGAGATCAAAATCTACAACTCCATAGACGCGGACATAATCTTCCATGGAAGCTTAAGCAGAGAACAAATAAAGAAATAAAGAAGAGAGTTTATGTTTGTCCAGAGAAGAGTTGTGTTCATCATGATCCTTCAAGGGCACTTGGTGACTTAACTGGGATAAAAAAGCACTTTTGTAGAAAGCATGGTGAAAAGAAGTGGAAGTGTGAGAAGTGCTCAAAACGTTATGCTGTTCAGTCAGATTGGAAAGCTCACTCAAAAATATGTGGTACTAGAGAATACAAATGTGACTGTGGAACTATCTTTTCAAGGAGAGATAGCTTCATAACTCATAGAGCCTTCTGTGATGCATTAGCAGAAGAAACAGCAAGAGTAAGTGCAGCATCAGAAATAAACAACAATTCATTATTAAGGGATAATATTGGTAATTACAACATAATGGGAACAACAACATCCTTAGTTCCTAACAACAACATGCCAAATCATTTTTCATCAATTTTCAAACAAATTTCAACTTCTCATAAATCAACCAATCAAACAAGAGGACTCTCTCTTTGGATGAATCAAAATCAAACATCTCATAATTCTCAACCTCATGAAACCAATGGTAATAATTTGCATGAGATTCATCATCATCAACAACAACAACTTGACACATCATCAAGAGGATTATTATATGGTGTGAATGATAATCATAATCCAAACACAAATAATTATCAGCTTAATTGGGTTTATGGAAATAAACTTTCCACTAATTGCAACCAAGATTTAATTACTAGTACTACAACTTCACTTCCACTAGGAAACATTAATGTTAATGTTAAGGATGATGTTACAAACCAACAAATTTGTTCTTCATTGTATAGCTCACAACATCAAATACAATCAAATCAAACATCATCAGCAAACATGTCAGCTACAGCTTTGTTACAAAAAGCTGCTCAAATTGGATCAACATCAAGTGATACATCATTCCTTGGAAGTTTAGGTTTGAAATGCAGTAATAATAATAACATTATTACTAATGATGTGAATAAGTTTGGTAGTAATTCTGGTATGTATGGTACTACAAGTTCATTACTCATTAGTCTTGGAAATGAAGAAGATCATAACACTGCATGTGATTTTACACAAATGCACCCTTCTAAACGTAGACATGTGCAAAGTGATGAGAATGGTGGTGGAGGGCAAACTAGGGATTTTCTTGGTGTTGGTGTGCAAACCATTTGTCATCCTTCATCAATCAATGGATGGATTTGA 1470 0.3429 MLKKMDEVEITNGNNFPQNPTISASNNPPTLKRKRNLPGNPDPEAEVIALSPKTLMATNRFLCETCGKGFQRDQNLQLHRRGHNLPWKLKQRTNKEIKKRVYVCPEKSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVSAASEINNNSLLRDNIGNYNIMGTTTSLVPNNNMPNHFSSIFKQISTSHKSTNQTRGLSLWMNQNQTSHNSQPHETNGNNLHEIHHHQQQQLDTSSRGLLYGVNDNHNPNTNNYQLNWVYGNKLSTNCNQDLITSTTTSLPLGNINVNVKDDVTNQQICSSLYSSQHQIQSNQTSSANMSATALLQKAAQIGSTSSDTSFLGSLGLKCSNNNNIITNDVNKFGSNSGMYGTTSSLLISLGNEEDHNTACDFTQMHPSKRRHVQSDENGGGGQTRDFLGVGVQTICHPSSINGWI 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02124 489 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Trre8g02124 489 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 477 IPR031140 -
Trre8g02124 489 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Trre8g02124 489 Gene3D Classic Zinc Finger 40 113 - -
Trre8g02124 489 MobiDBLite consensus disorder prediction 1 43 - -
Trre8g02124 489 Gene3D Classic Zinc Finger 130 197 - -
Trre8g02124 489 MobiDBLite consensus disorder prediction 11 33 - -
Trre8g02124 489 FunFam protein indeterminate-domain 12-like 40 108 - -
Trre8g02124 489 FunFam protein indeterminate-domain 5, chloroplastic-like 115 194 - -
Trre8g02124 489 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02124 Trre-Chr8 17047130 17049784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02124 25 489 IDZ Gene Family AT1G03840 53.200 3.89e-147 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre8g02124 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02124 K25870 - gmx:100790620 591.267