Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02123 ATGACTAAATGCAGTGAGCTTCAAAACAATCATAGCATCACAGTGGATGGAAGAAAGGATAGCTTAATTAGAACTTGTCTCACATGTGGTCATCATATCAAATGCCAAGAACAGGGTGGTGAAATTAATGACTTACCTGGATTGCCTGCTGGAGTGAAGTTTGATCCAACAGATCAAGAGATTCTTGAACATTTGGAAGCTAAGGTGAGGTCTGATATTCATAAGCTTCATCCTCTCATTGATGAGTTCATCCCTACTCTTGAAGGAGAGAATGGAATTTGTTATACTCATCCAGAGAAATTGCCAGGAGTAAGCAAAGATGGCCTGATCCGCCATTTCTTTCACCGACCATCGAAGGCATACACAACAGGAACACGAAAAAGAAGAAAAGTACATTCAGATCATGAAGATGGTAGCGAAACACGTTGGCACAAAACAGGTAAAACAAGACCGGTTTACAACAATTCCAAGTTAAAAGGTTACAAAAAAATCCTTGTACTTTACACAAACTATGGAAAGCAAAGAAAGCCAGAGAAAACAAATTGGGTGATGCATCAATATCATCTTGGAAATGATGAAGAAGAGAAAGAAGGTGTGTTAGTTGTGTCCAAAGTTTTCTATCAAACTCAACCAAGACAATGTGGTGGTGGTAATTCATTGATGAAAGACTCAAAACCTATGAAGGGTCAAAGTGGAAATGAGGTAATAAATGGTAAAACTAGTACTACTAATGGATCATTTGTTGAGTACTATCATTCAAATTTGATATCATTTGATCAAGGGAATCAAAATAGATCTGGCAATTCTCAAGTAATTTCACATTTTGAAGGTGGTTCTTTCATTCCTTGA 849 0.3722 MTKCSELQNNHSITVDGRKDSLIRTCLTCGHHIKCQEQGGEINDLPGLPAGVKFDPTDQEILEHLEAKVRSDIHKLHPLIDEFIPTLEGENGICYTHPEKLPGVSKDGLIRHFFHRPSKAYTTGTRKRRKVHSDHEDGSETRWHKTGKTRPVYNNSKLKGYKKILVLYTNYGKQRKPEKTNWVMHQYHLGNDEEEKEGVLVVSKVFYQTQPRQCGGGNSLMKDSKPMKGQSGNEVINGKTSTTNGSFVEYYHSNLISFDQGNQNRSGNSQVISHFEGGSFIP 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02123 282 MobiDBLite consensus disorder prediction 224 239 - -
Trre8g02123 282 Pfam No apical meristem (NAM) protein 49 189 IPR003441 GO:0003677|GO:0006355
Trre8g02123 282 Gene3D NAC domain 57 212 IPR036093 GO:0003677|GO:0006355
Trre8g02123 282 MobiDBLite consensus disorder prediction 216 239 - -
Trre8g02123 282 ProSiteProfiles NAC domain profile. 48 208 IPR003441 GO:0003677|GO:0006355
Trre8g02123 282 MobiDBLite consensus disorder prediction 127 147 - -
Trre8g02123 282 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 19 233 IPR044799 GO:0003700
Trre8g02123 282 FunFam NAC domain-containing protein 73 57 212 - -
Trre8g02123 282 MobiDBLite consensus disorder prediction 122 151 - -
Trre8g02123 282 SUPERFAMILY NAC domain 43 208 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02123 Trre-Chr8 17041430 17043825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02123 24 225 NAC Transcription Factor Family AT4G28500 77.723 8.47e-116 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre8g02123 NAM 1.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02123 - - gmx:100797459 483.411