Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g02121 ATGGAAGGTGGTTGTTCAGAAGAAGAGGAGAAGAACAAGAACAACAAGTCACTAGAGGAAGAGAACAAGGTTAAACGCAAAATGAAGTCTGCTTCACAGTTAGAGATTCTTGAAAAAACATATGCTGCTGAGTCTTACCCTTCTGAAGCAATGAGGGCTGAGTTATCTGTCAAGTTAGGTTTGTCTGATCGTCAGTTGCAGATGTGGTTCTGTCACCGGAGACAGAAGGATAGGAAGGCTACACTGGTGGTGGTTAAGAACGAGGTCACGCTAACTCCGCCTTCATTCGAGGAGGGTATTGAGCAAATACCAGTTGCTGATGTTAGGCATCATGATCATGGTTTGGTTTCTGTCTTGAGACCAATTGGTCATGTGGACTCGCCGCGATTTGTGGCACAGCACGGGTTGATGGCATTTCCTAGGATGTTGGCATTGCCTGCAATGGATAGCAGTAGTTACCATGAAGCACATCGGACTATACAGGAGCTGCGAGTTGTTGCATTTGTGGAAAGACAATTGGGGGAGCCATTGAGAGAGGACGGACCCATTCTTGGGATGGAATTTGATTCCCCGCCTCCTGGTGCATTTGGTGGACGATTAGGGGCAGTGGCAATGGGGCAACACAGGCAACCTGAATGGCCTGTTGAGGAAAAAGTTTATGAACATTTGGATAAGGGAATTTCAAGGACTCTCCATGAATATCAATTTATTCCAGAGCAGCCAACTGTTAGAAATGAGATATACGAGACAGTTACTACTGCATCTATCCACTTTAGTTCTCTTGATGGTGTTGCACATTCTAGGACATCACTATCTAGTGGGCCATCTTTTCTTGATGGGAATGAATCTGCACCTAAGGTGTATGGAGTCCAAGGTCAGAAGATACCTGGTCTAAATCTTTTGTCTCAGTCCGAGCAAGGTAGGTCGAATCATCTTATGCTTTCTTCTTCAGGAGGGAATGCTGATGTTCCACGAAAGAACCCATTTGCCAATGTAATTCTTGACATTCAAAGGGGGGCTCTCCAAGTAACTCCGATTGACGGCCCTCTAGTGCCATCTGATAGGAGGGTTATCCATGAGGAAGAACTTTCAAGGTTTCAAAGGAAGCGAAAGAATGAAGAGGCTAGAATGCAACGGGAACTTGAAGTGCAAGAGAAAAGAATTAGAAAAGAGCTCGTAAAACAGGATATTTTAAGGCAAAAGAGAGAGGAGCAAATAAAGAAAGAGATGGAGAGGCAAGAACGTGAAAGGCAGAAGGAAGAGGAAAGGTTACTGCGTGAAAGACAGCGAGAGGAGGATAGGCTCCTTAGAGAACAGAGACGAGAGCAGGAGCGGCGGGAGAAGTTTTTGCAGAAGGAGTCAATCAGAACTGAGAAACTGAGACAGAAGGAAGAACTACATAGGGTGAAAGAGGAGGCAAGGATTAAAGCTGCCAGTGAGAGAGCCATTGCCCGCAGAATGGTCGACCTTATTGAAGATGAACGTCTGGAACTCATGGAATTAGCTGCATCAAAGAAGGGGCTATCTTCAATACTGGCTCTTGATGATGAAACTATGCAAAATCTTGAATCATATGGAGATGGGCAGACTTCCTTCCCGCCCAAGTCTGTACAGTTGAAAAGAGCTTTTTCAGTTCAACCTTGGTCAGATTCTGATGAGAATGTAGGAAATCTTCTAATGGTTTGGAAATTCTTGATTACCTTTGCTGATGTTCTGGGAATATGGCCGTTTACCTTGGATGAGCTTATACAAGCTTTTCATGACTATGACCCTAGGATGTTAGGTGAGGTCCATATTGCTCTTCTGAGATCCATTATAAAAGATATTGAAGATGTTGCAAGAACACCCACTACTGGGTTAGGAGCTAACCAAAACAGTGTTATGAACTCTGGTGGGGGGCATCCACAAGTAGTTGAAGGGGCTTATGTATGGGGTTTTGATATAAGAAATTGGCAGCGGCATTTAAATCCATTAACATGGCCGGAGATTTTGCGACAATTTGCATTGTCAGCTGGATTTGGGCCGCAGTTGAAGAAACAGAGTATTGAGCAAGCGCATCCTAGCAACGATGAGGGTAATGATGGTAAAGATATAATTTCTAATCTACGCAGTGGAGCTGCTGTTGAAAATGCTGTTGCTATTATGCAAGAGAAGGGATTATCTAATCCTAGAAGACATAGGCATCGTTTGACGCCTGGAACTGTTAAATATGCTGCATTTCATGTCCTGTCTCTGGAAGGAAGCAGAGGCCTCAATATATTGGAAGTTGCAGATAAGATTCAGAAATCTGGACTCCGTGATCTTACAATAAGCAAAAATCCAGAGGCTTCTGTAGCTTCTGCTTTGTCTAGAGATACAGAGCTATTTGAAAGGACAGCTCCTTCAACATATTGTGTACGTCCTGTATATAGAAAGGACCCTGCTGATTCTGAAGCAATTTATTCAGCTGCCAGGGAAAGAATCAGGATATTTAAAAGTGGATTTGTGGGTGCAGAAGAAGCTAATGATGGTGAAAGGGATGAAGATTGTGAAAGTGATATGGCAAAAGATCCCGAGATTGATGATTTAGGAGCTCAACCAAATGCAAAAAAGGAGGTTTCAAATTATGAGGAATTTAATGCAAACACTGTCGTGAGAAGTGGGAAAAACAATGATGAGGTTTTGCAAACTCCCCAAAGTTGCCATGAGAAAGTGGATGAGGGTTTAAGATCAACTGTTGATGAAGGTTTCAATGAACATAAAGATGTTTGTATATCTAGTAAAATTACTGTTTGCAGCAAAGATGTTGCTAATCCTATTCTAAAAGGCGTGGATGTTGATGAAAACACTCTTGGTGAACCATGGGTACAAGGGCTTATGGAGGGAGAGTACTCAGATCTTAGTGTAGAGGAGCGTCTTCATGCTCTTGTTGCTTTGATTACTGTGGCAATTGAAGGAAATTCTATCCATGTTGTGCTGGAGGAACGTCTAGAAGCCGCAAATGCTTTAAAGAAACAGATGGGGGCTGAGGCACATCTTGATAAACGGCGTATTAAAGAGGATTATTTTGTTAAAATGCAGTCTTCCTCATATTTGAAAAACAAGAATGAACCAGCTGTTGCAATTCCATCAGTAGGCGGTAAACAATGCACATTGCATACTGAGGATGTCGAAAATGATAAGGCTTTACTCACTCCCTGTGACCGGCATGAACAGATAAATGCACTACAGGAAAAGGAAAATCTTCTGCAGAGTTCCTTATTAGAAGGGAATATGCAGAAGCAAGATTGTTCTACAGGCCCGGATAATTATTCAATCCAACAAACTATATATGCTTCTGAAAGATCAAGGTCAAATTTAAAATCATACATTGATCACTTGGCTGAACAAACTTACATGTGTAGATCATTGCCTCTTGGTTTGGATCGGAGAAGAAACCGATACTGGCAATTCACTACTTCTGCTTCTCAAAATGATCCAGGTTGTGGTAGGATTTTTGTGGAATTGCATGATGGCTGTTGGAAGCTGATTGATTCTGAAGAGGGTTTTGATGCTCTATTGGTATCATTGGACGTACGTGGGGTCAGGGAATCTCACTTGCATATGATGTTGCAAAGAATTGAAATGTCCTTCAAAGAATCTGTTAGAAGAAATGTCCAAAATGGACACACTGTCAAGAAACTCGATACAGAAGCAGTTAAAATAGCTACAGCTTCCGCATGCATTGATGATTTGAACACATCAGTGGCGTCAACATCTTTTACGGTTCAGCTTGGAAGAAATGAGGTTGAGAACAAAGATGCTTATATGAGATATTGGGACTTTGAGAAATGGATGCGAAAGGAATGTCTAACATCTTGGGAAAAAGACAAGTTTGGGAAGAGGAGGTGCAACCAACTACTTTACATGTGTGATTGGTGCCATCATGTCTTTTTCTTTAGAGGATCACTGTGTCCTTCATGCGATGGAATAGCTCTCAGTACTAGTCAGGGGAACTATTCATCCTCTTCTCCAATGAGGATGAGATTGCTCAAAATCATCTTGTCAGTTGTTGAGGCAACCCTTCCTCAAGAAGCTCTGCAACCTTTTTGGACAGAGAGGTACAGAAAGTCTTGGGGTTTAAAACTGGAAGCTTCCTCATCAACTGAAGACATTCTGCAGATGTTGACTGCATTGGAAGGTGCTATAAAAAGGGAGTATTTGGCTTCAGACTATGAAACTACCAGTGAGCTGTTAGGTTCAGTTTGCTCGTCCAGTTGTCTCCCTAATGATACCATTGGTGGTGGAAGGATACCTGTGCTTCCATGGGTGCCATATACAACTGCTGCTGTGGCTCTGAGGCTCATGGAACTTGATACATGCGCCTTTTACACCTCACAGCAGAAGCTAGAGTCCAAGGATAAAAAAGTTGGAATTGTTGTGAAGCTTCCATCAAAATATGCTGCTGCCAAAAATTCCTACGATGCTGGTGCAATTGAAACTTCATTTCAGGCTAAGCATACTGTAGAGAACCGGCGTGCTCTTGGGGGTGTTCTTGGTGCTGGCCTCGAGAGCTGCAGCAGACGCCAAAGGACTCGTCAAGACCGCAGCCATTCTCGTGATCAAAGATCACAGGGAAGAGTTGTTAGTTCCAGATCAACATCCAGAAAGAGAAGCACTACCAGTACATCTAACAGTAGGAAAAAAGATAGCAGGATAGGAAAATTACTTGGATGGAAAGGGACACCGAACATTCGTGGTCGGAGAAGCATCAGAAGCAGGCAGAAACCTGAAGCCAAGATGGATGTGATCATAGAGGAGATGAATGAAGGTGAAAGTGAAACAGAAGCCAATGCGCGGAATGCTAGTAGTTTGGAAAGATCAGACTATGAAGGCGAACTTTATCGAGCAACAGATGAGTATCATCATCTGGTAGATAATAATAATAATATTAATGTTGATGGATGTAAGGATGGATTTAGTGGGAAATCTGAGAACTTAATAGAACAAAGCCATTATAATGTGGATGATGAGAACGATGTGATTATGGATGACAATAATAGCGAGGAAGATGAGGAAGATGGGCAAGTCGATCTTAATACCGAAGATTATATAATTGGAGGGGACTCAGATACAGGGTACAACAGAGAAGAAAATGAAGAACACGAGGATCTAGATGGAGATTGTTCTACATCATCAGATTGCAGTGATTAA 5172 0.4242 MEGGCSEEEEKNKNNKSLEEENKVKRKMKSASQLEILEKTYAAESYPSEAMRAELSVKLGLSDRQLQMWFCHRRQKDRKATLVVVKNEVTLTPPSFEEGIEQIPVADVRHHDHGLVSVLRPIGHVDSPRFVAQHGLMAFPRMLALPAMDSSSYHEAHRTIQELRVVAFVERQLGEPLREDGPILGMEFDSPPPGAFGGRLGAVAMGQHRQPEWPVEEKVYEHLDKGISRTLHEYQFIPEQPTVRNEIYETVTTASIHFSSLDGVAHSRTSLSSGPSFLDGNESAPKVYGVQGQKIPGLNLLSQSEQGRSNHLMLSSSGGNADVPRKNPFANVILDIQRGALQVTPIDGPLVPSDRRVIHEEELSRFQRKRKNEEARMQRELEVQEKRIRKELVKQDILRQKREEQIKKEMERQERERQKEEERLLRERQREEDRLLREQRREQERREKFLQKESIRTEKLRQKEELHRVKEEARIKAASERAIARRMVDLIEDERLELMELAASKKGLSSILALDDETMQNLESYGDGQTSFPPKSVQLKRAFSVQPWSDSDENVGNLLMVWKFLITFADVLGIWPFTLDELIQAFHDYDPRMLGEVHIALLRSIIKDIEDVARTPTTGLGANQNSVMNSGGGHPQVVEGAYVWGFDIRNWQRHLNPLTWPEILRQFALSAGFGPQLKKQSIEQAHPSNDEGNDGKDIISNLRSGAAVENAVAIMQEKGLSNPRRHRHRLTPGTVKYAAFHVLSLEGSRGLNILEVADKIQKSGLRDLTISKNPEASVASALSRDTELFERTAPSTYCVRPVYRKDPADSEAIYSAARERIRIFKSGFVGAEEANDGERDEDCESDMAKDPEIDDLGAQPNAKKEVSNYEEFNANTVVRSGKNNDEVLQTPQSCHEKVDEGLRSTVDEGFNEHKDVCISSKITVCSKDVANPILKGVDVDENTLGEPWVQGLMEGEYSDLSVEERLHALVALITVAIEGNSIHVVLEERLEAANALKKQMGAEAHLDKRRIKEDYFVKMQSSSYLKNKNEPAVAIPSVGGKQCTLHTEDVENDKALLTPCDRHEQINALQEKENLLQSSLLEGNMQKQDCSTGPDNYSIQQTIYASERSRSNLKSYIDHLAEQTYMCRSLPLGLDRRRNRYWQFTTSASQNDPGCGRIFVELHDGCWKLIDSEEGFDALLVSLDVRGVRESHLHMMLQRIEMSFKESVRRNVQNGHTVKKLDTEAVKIATASACIDDLNTSVASTSFTVQLGRNEVENKDAYMRYWDFEKWMRKECLTSWEKDKFGKRRCNQLLYMCDWCHHVFFFRGSLCPSCDGIALSTSQGNYSSSSPMRMRLLKIILSVVEATLPQEALQPFWTERYRKSWGLKLEASSSTEDILQMLTALEGAIKREYLASDYETTSELLGSVCSSSCLPNDTIGGGRIPVLPWVPYTTAAVALRLMELDTCAFYTSQQKLESKDKKVGIVVKLPSKYAAAKNSYDAGAIETSFQAKHTVENRRALGGVLGAGLESCSRRQRTRQDRSHSRDQRSQGRVVSSRSTSRKRSTTSTSNSRKKDSRIGKLLGWKGTPNIRGRRSIRSRQKPEAKMDVIIEEMNEGESETEANARNASSLERSDYEGELYRATDEYHHLVDNNNNINVDGCKDGFSGKSENLIEQSHYNVDDENDVIMDDNNSEEDEEDGQVDLNTEDYIIGGDSDTGYNREENEEHEDLDGDCSTSSDCSD 1723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g02121 1723 Pfam DDT domain 553 608 IPR018501 -
Trre8g02121 1723 Pfam Homeodomain 25 79 IPR001356 GO:0003677
Trre8g02121 1723 Pfam HB1, ASXL, restriction endonuclease HTH domain 733 800 IPR007759 GO:0006355
Trre8g02121 1723 ProSiteProfiles DDT domain profile. 552 611 IPR018501 -
Trre8g02121 1723 MobiDBLite consensus disorder prediction 1514 1531 - -
Trre8g02121 1723 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 946 986 IPR028942 -
Trre8g02121 1723 Coils Coil 8 28 - -
Trre8g02121 1723 ProSiteProfiles 'Homeobox' domain profile. 20 80 IPR001356 GO:0003677
Trre8g02121 1723 MobiDBLite consensus disorder prediction 1663 1723 - -
Trre8g02121 1723 Coils Coil 356 383 - -
Trre8g02121 1723 MobiDBLite consensus disorder prediction 834 862 - -
Trre8g02121 1723 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1128 1200 IPR028941 -
Trre8g02121 1723 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 1 1723 IPR044977 GO:0006357
Trre8g02121 1723 ProSiteProfiles HARE-type HTH domain profile. 733 802 IPR007759 GO:0006355
Trre8g02121 1723 MobiDBLite consensus disorder prediction 1666 1685 - -
Trre8g02121 1723 MobiDBLite consensus disorder prediction 842 859 - -
Trre8g02121 1723 Coils Coil 399 446 - -
Trre8g02121 1723 MobiDBLite consensus disorder prediction 1510 1586 - -
Trre8g02121 1723 SUPERFAMILY Homeodomain-like 20 79 IPR009057 -
Trre8g02121 1723 CDD homeodomain 23 79 IPR001356 GO:0003677
Trre8g02121 1723 SMART HOX_1 22 84 IPR001356 GO:0003677
Trre8g02121 1723 MobiDBLite consensus disorder prediction 1532 1547 - -
Trre8g02121 1723 SMART testlast3 552 611 IPR018501 -
Trre8g02121 1723 Gene3D - 3 82 - -
Trre8g02121 1723 Coils Coil 452 472 - -
Trre8g02121 1723 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g02121 Trre-Chr8 17019000 17033218 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g02121 21 1490 Homeobox Transcription Factor Family AT5G44180 49.343 0.0 1255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Trre8g02121 WSD 3.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g02121 - - gmx:100797480 2019.97